A shorter splicing isoform antagonizes ZBP1 to modulate cell death and inflammatory responses

EMBO J. 2024 Nov;43(21):5037-5056. doi: 10.1038/s44318-024-00238-7. Epub 2024 Sep 19.

Abstract

Z-DNA-binding protein 1 (ZBP1) is an interferon-inducible sensor of Z-DNA and Z-RNA, which has emerged as a critical regulator of cell death and inflammation. ZBP1 binds Z-DNA and Z-RNA via its Zα domains, and signals by engaging RIPK3 and RIPK1 via its RIP homotypic interaction motifs (RHIMs). Here, we show that mice express an alternatively-spliced shorter ZBP1 isoform (ZBP1-S), which harbours the Zα domains but lacks the RHIMs, and acts as an endogenous inhibitor of the full-length protein (ZBP1-L). Mice and cells expressing only ZBP1-S are resistant to ZBP1-mediated cell death and inflammation. In contrast, cells lacking ZBP1-S show increased ZBP1-L-induced death compared to cells expressing both isoforms. Moreover, loss of the short isoform accelerates and exacerbates skin inflammation induced by ZBP1-mediated necroptosis of RIPK1-deficient keratinocytes, revealing an important physiological role of ZBP1-S. Mechanistically, ZBP1-S suppresses ZBP1-L-mediated cell death by binding to Z-nucleic acids via its Zα domains. Therefore, ZBP1-S acts as an endogenous inhibitor that competes with full-length ZBP1-L for binding Z-nucleic acid ligands to fine-tune ZBP1-mediated cell death and inflammation.

Keywords: Cell Death; Inflammation; Necroptosis; ZBP1.

MeSH terms

  • Alternative Splicing
  • Animals
  • Cell Death*
  • Humans
  • Inflammation* / genetics
  • Inflammation* / metabolism
  • Keratinocytes / metabolism
  • Mice
  • Mice, Inbred C57BL
  • Mice, Knockout
  • Necroptosis / genetics
  • Protein Isoforms* / genetics
  • Protein Isoforms* / metabolism
  • RNA-Binding Proteins* / genetics
  • RNA-Binding Proteins* / metabolism
  • Receptor-Interacting Protein Serine-Threonine Kinases* / genetics
  • Receptor-Interacting Protein Serine-Threonine Kinases* / metabolism

Substances

  • Zbp1 protein, mouse
  • RNA-Binding Proteins
  • Protein Isoforms
  • Receptor-Interacting Protein Serine-Threonine Kinases
  • Ripk1 protein, mouse