RTP801 interacts with the tRNA ligase complex and dysregulates its RNA ligase activity in Alzheimer's disease

Nucleic Acids Res. 2024 Oct 14;52(18):11158-11176. doi: 10.1093/nar/gkae776.

Abstract

RTP801/REDD1 is a stress-responsive protein overexpressed in neurodegenerative diseases such as Alzheimer's disease (AD) that contributes to cognitive deficits and neuroinflammation. Here, we found that RTP801 interacts with HSPC117, DDX1 and CGI-99, three members of the tRNA ligase complex (tRNA-LC), which ligates the excised exons of intron-containing tRNAs and the mRNA exons of the transcription factor XBP1 during the unfolded protein response (UPR). We also found that RTP801 modulates the mRNA ligase activity of the complex in vitro since RTP801 knockdown promoted XBP1 splicing and the expression of its transcriptional target, SEC24D. Conversely, RTP801 overexpression inhibited the splicing of XBP1. Similarly, in human AD postmortem hippocampal samples, where RTP801 is upregulated, we found that XBP1 splicing was dramatically decreased. In the 5xFAD mouse model of AD, silencing RTP801 expression in hippocampal neurons promoted Xbp1 splicing and prevented the accumulation of intron-containing pre-tRNAs. Finally, the tRNA-enriched fraction obtained from 5xFAD mice promoted abnormal dendritic arborization in cultured hippocampal neurons, and RTP801 silencing in the source neurons prevented this phenotype. Altogether, these results show that elevated RTP801 impairs RNA processing in vitro and in vivo in the context of AD and suggest that RTP801 inhibition could be a promising therapeutic approach.

MeSH terms

  • Alzheimer Disease* / genetics
  • Alzheimer Disease* / metabolism
  • Animals
  • DEAD-box RNA Helicases / genetics
  • DEAD-box RNA Helicases / metabolism
  • Disease Models, Animal
  • HEK293 Cells
  • Hippocampus* / metabolism
  • Humans
  • Male
  • Mice
  • Neurons / metabolism
  • RNA Ligase (ATP) / genetics
  • RNA Ligase (ATP) / metabolism
  • RNA Splicing / genetics
  • RNA, Transfer / genetics
  • RNA, Transfer / metabolism
  • Transcription Factors* / genetics
  • Transcription Factors* / metabolism
  • Unfolded Protein Response / genetics
  • X-Box Binding Protein 1* / genetics
  • X-Box Binding Protein 1* / metabolism

Substances

  • DEAD-box RNA Helicases
  • RNA Ligase (ATP)
  • RNA, Transfer
  • Transcription Factors
  • X-Box Binding Protein 1
  • XBP1 protein, human
  • DDIT4 protein, human