Transcriptomic Analysis across Crayfish (Cherax quadricarinatus) Claw Regeneration Reveals Potential Stem Cell Sources for Cultivated Crustacean Meat

Int J Mol Sci. 2024 Aug 7;25(16):8623. doi: 10.3390/ijms25168623.

Abstract

In the face of rising global demand and unsustainable production methods, cultivated crustacean meat (CCM) is proposed as an alternative means to produce delicious lobster, shrimp, and crab products. Cultivated meat requires starting stem cells that may vary in terms of potency and the propensity to proliferate or differentiate into myogenic (muscle-related) tissues. Recognizing that regenerating limbs are a non-lethal source of tissue and may harbor relevant stem cells, we selected those of the crayfish Cherax quadricarinatus as our model. To investigate stem cell activity, we conducted RNA-Seq analysis across six stages of claw regeneration (four pre-molt and two post-molt stages), along with histology and real-time quantitative PCR (qPCR). Our results showed that while genes related to energy production, muscle hypertrophy, and exoskeletal cuticle synthesis dominated the post-molt stages, growth factor receptors (FGFR, EGFR, TGFR, and BMPR) and those related to stem cell proliferation and potency (Cyclins, CDKs, Wnts, C-Myc, Klf4, Sox2, PCNA, and p53) were upregulated before the molt. Pre-molt upregulation in several genes occurred in two growth peaks; Stages 2 and 4. We therefore propose that pre-molt limb regeneration tissues, particularly those in the larger Stage 4, present a prolific and non-lethal source of stem cells for CCM development.

Keywords: RNA-Seq; cell proliferation; cultivated crustacean meat; differential gene expression; limb regeneration; muscle development; stem cells.

MeSH terms

  • Animals
  • Astacoidea* / genetics
  • Gene Expression Profiling
  • Hoof and Claw / metabolism
  • Regeneration* / genetics
  • Stem Cells* / cytology
  • Stem Cells* / metabolism
  • Transcriptome

Grants and funding

The authors declare that this study received funding from Shiok Meats and New Harvest. The funders were not involved in the study design, collection, analysis, interpretation of data, the writing of this article or the decision to submit it for publication. This study forms part of a PhD project. Lisa Musgrove and Avani Bhojwani were supported by the Australian Government’s Research Training Program (RTP) Scholarship.