NMR metabolomics-guided DNA methylation mortality predictors

EBioMedicine. 2024 Sep:107:105279. doi: 10.1016/j.ebiom.2024.105279. Epub 2024 Aug 17.

Abstract

Background: 1H-NMR metabolomics and DNA methylation in blood are widely known biomarkers predicting age-related physiological decline and mortality yet exert mutually independent mortality and frailty signals.

Methods: Leveraging multi-omics data in four Dutch population studies (N = 5238, ∼40% of which male) we investigated whether the mortality signal captured by 1H-NMR metabolomics could guide the construction of DNA methylation-based mortality predictors.

Findings: We trained DNA methylation-based surrogates for 64 metabolomic analytes and found that analytes marking inflammation, fluid balance, or HDL/VLDL metabolism could be accurately reconstructed using DNA-methylation assays. Interestingly, a previously reported multi-analyte score indicating mortality risk (MetaboHealth) could also be accurately reconstructed. Sixteen of our derived surrogates, including the MetaboHealth surrogate, showed significant associations with mortality, independent of relevant covariates.

Interpretation: The addition of our metabolic analyte-derived surrogates to the well-established epigenetic clock GrimAge demonstrates that our surrogates potentially represent valuable mortality signal.

Funding: BBMRI-NL, X-omics, VOILA, Medical Delta, NWO, ERC.

Keywords: Ageing biomarkers; DNA methylation predictors; Epidemiology; Epigenetic clock; Metabolic risk score; NMR metabolomics.

MeSH terms

  • Aged
  • Aged, 80 and over
  • Biomarkers*
  • DNA Methylation*
  • Female
  • Humans
  • Magnetic Resonance Spectroscopy / methods
  • Male
  • Metabolome
  • Metabolomics* / methods
  • Middle Aged
  • Mortality

Substances

  • Biomarkers