Single-molecule imaging reveals allosteric stimulation of SARS-CoV-2 spike receptor binding domain by host sialic acid

Sci Adv. 2024 Jul 19;10(29):eadk4920. doi: 10.1126/sciadv.adk4920. Epub 2024 Jul 17.

Abstract

Conformational dynamics of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike glycoprotein (S) mediate exposure of the binding site for the cellular receptor, angiotensin-converting enzyme 2 (ACE2). The N-terminal domain (NTD) of S binds terminal sialic acid (SA) moieties on the cell surface, but the functional role of this interaction in virus entry is unknown. Here, we report that NTD-SA interaction enhances both S-mediated virus attachment and ACE2 binding. Through single-molecule Förster resonance energy transfer imaging of individual S trimers, we demonstrate that SA binding to the NTD allosterically shifts the S conformational equilibrium, favoring enhanced exposure of the ACE2-binding site. Antibodies that target the NTD block SA binding, which contributes to their mechanism of neutralization. These findings inform on mechanisms of S activation at the cell surface.

MeSH terms

  • Allosteric Regulation
  • Angiotensin-Converting Enzyme 2* / chemistry
  • Angiotensin-Converting Enzyme 2* / metabolism
  • Binding Sites
  • COVID-19 / metabolism
  • COVID-19 / virology
  • Fluorescence Resonance Energy Transfer
  • Humans
  • N-Acetylneuraminic Acid* / chemistry
  • N-Acetylneuraminic Acid* / metabolism
  • Protein Binding*
  • Protein Domains
  • SARS-CoV-2* / metabolism
  • Single Molecule Imaging
  • Spike Glycoprotein, Coronavirus* / chemistry
  • Spike Glycoprotein, Coronavirus* / metabolism
  • Virus Attachment
  • Virus Internalization

Substances

  • Spike Glycoprotein, Coronavirus
  • spike protein, SARS-CoV-2
  • Angiotensin-Converting Enzyme 2
  • N-Acetylneuraminic Acid
  • ACE2 protein, human