Identification of Proteolysis Targeting Chimeras (PROTACs) for Lysine Demethylase 5 and Their Neurite Outgrowth-Promoting Activity

Chem Pharm Bull (Tokyo). 2024;72(7):638-647. doi: 10.1248/cpb.c23-00026.

Abstract

Lysine demethylase 5 (KDM5) proteins are involved in various neurological disorders, including Alzheimer's disease, and KDM5 inhibition is expected to be a therapeutic strategy for these diseases. However, the pharmacological effects of conventional KDM5 inhibitors are insufficient, as they only target the catalytic functionality of KDM5. To identify compounds that exhibit more potent pharmacological activity, we focused on proteolysis targeting chimeras (PROTACs), which degrade target proteins and thus inhibit their entire functionality. We designed and synthesized novel KDM5 PROTAC candidates based on previously identified KDM5 inhibitors. The results of cellular assays revealed that two compounds, 20b and 23b, exhibited significant neurite outgrowth-promoting activity through the degradation of KDM5A in neuroblastoma neuro 2a cells. These results suggest that KDM5 PROTACs are promising drug candidates for the treatment of neurological disorders.

Keywords: epigenetics; neurodegenerative disorder; target protein degradation.

MeSH terms

  • Animals
  • Cell Line, Tumor
  • Dose-Response Relationship, Drug
  • Enzyme Inhibitors / chemical synthesis
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology
  • Humans
  • Mice
  • Molecular Structure
  • Neuronal Outgrowth* / drug effects
  • Proteolysis Targeting Chimera
  • Proteolysis* / drug effects
  • Retinoblastoma-Binding Protein 2 / antagonists & inhibitors
  • Retinoblastoma-Binding Protein 2 / metabolism
  • Structure-Activity Relationship

Substances

  • KDM5A protein, human
  • Enzyme Inhibitors
  • Retinoblastoma-Binding Protein 2
  • Proteolysis Targeting Chimera