Rational Design of Novel Allosteric EYA2 Inhibitors as Potential Therapeutics for Multiple Brain Cancers

ChemMedChem. 2024 Sep 16;19(18):e202400179. doi: 10.1002/cmdc.202400179. Epub 2024 Jul 19.

Abstract

The Eyes Absent (EYA) family of developmental proteins, often in partnership with the sine oculis (SIX) homeobox proteins, promote cancer metastasis and recurrence in numerous tumor types. In addition to being a transcriptional coactivator, EYA2 is a Tyr phosphatase that dephosphorylates H2AX which leads to repair instead of apoptosis upon DNA damage and ERβ which inhibits the anti-tumor transcriptional activity of ERβ. The SIX members of the EYA-SIX complex are difficult to target, therefore, we targeted the EYA2 to promote cell death and prevent cancer progression. We conducted structural optimization of a previously discovered allosteric inhibitor of EYA2, 9987, using the combination of in silico modeling, biochemical and cell-based assays. A new series of compounds was developed with significantly improved cellular activity and physiochemical properties desirable for brain targets. Specifically, compound 2 e showed >30-fold improvement in the medulloblastoma cell line D458, relative to 9987, while maintaining potent and selective inhibitory activity against EYA2 Tyr phosphatase activity and a good multiparameter optimization score for central nervous system drugs.

Keywords: Allosteric Inhibitor; Central Nervous System; EYA2; Glioblastoma; Medulloblastoma.

MeSH terms

  • Allosteric Regulation / drug effects
  • Antineoplastic Agents* / chemical synthesis
  • Antineoplastic Agents* / chemistry
  • Antineoplastic Agents* / pharmacology
  • Brain Neoplasms / drug therapy
  • Brain Neoplasms / metabolism
  • Brain Neoplasms / pathology
  • Cell Line, Tumor
  • Cell Proliferation / drug effects
  • Dose-Response Relationship, Drug
  • Drug Design*
  • Drug Screening Assays, Antitumor
  • Enzyme Inhibitors / chemical synthesis
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology
  • Humans
  • Intracellular Signaling Peptides and Proteins* / antagonists & inhibitors
  • Intracellular Signaling Peptides and Proteins* / metabolism
  • Molecular Structure
  • Nuclear Proteins* / antagonists & inhibitors
  • Nuclear Proteins* / chemistry
  • Nuclear Proteins* / metabolism
  • Protein Tyrosine Phosphatases* / antagonists & inhibitors
  • Protein Tyrosine Phosphatases* / metabolism
  • Structure-Activity Relationship

Substances

  • EYA2 protein, human
  • Protein Tyrosine Phosphatases
  • Antineoplastic Agents
  • Intracellular Signaling Peptides and Proteins
  • Nuclear Proteins
  • Enzyme Inhibitors