Functional diversity among cardiolipin binding sites on the mitochondrial ADP/ATP carrier

EMBO J. 2024 Jul;43(14):2979-3008. doi: 10.1038/s44318-024-00132-2. Epub 2024 Jun 5.

Abstract

Lipid-protein interactions play a multitude of essential roles in membrane homeostasis. Mitochondrial membranes have a unique lipid-protein environment that ensures bioenergetic efficiency. Cardiolipin (CL), the signature mitochondrial lipid, plays multiple roles in promoting oxidative phosphorylation (OXPHOS). In the inner mitochondrial membrane, the ADP/ATP carrier (AAC in yeast; adenine nucleotide translocator, ANT in mammals) exchanges ADP and ATP, enabling OXPHOS. AAC/ANT contains three tightly bound CLs, and these interactions are evolutionarily conserved. Here, we investigated the role of these buried CLs in AAC/ANT using a combination of biochemical approaches, native mass spectrometry, and molecular dynamics simulations. We introduced negatively charged mutations into each CL-binding site of yeast Aac2 and established experimentally that the mutations disrupted the CL interactions. While all mutations destabilized Aac2 tertiary structure, transport activity was impaired in a binding site-specific manner. Additionally, we determined that a disease-associated missense mutation in one CL-binding site in human ANT1 compromised its structure and transport activity, resulting in OXPHOS defects. Our findings highlight the conserved significance of CL in AAC/ANT structure and function, directly tied to specific lipid-protein interactions.

Keywords: Cardiolipin; Lipid–Protein Interaction; Membrane Transport; Mitochondria; Oxidative Phosphorylation.

MeSH terms

  • Adenine Nucleotide Translocator 1 / genetics
  • Adenine Nucleotide Translocator 1 / metabolism
  • Binding Sites
  • Cardiolipins* / metabolism
  • Humans
  • Mitochondria / genetics
  • Mitochondria / metabolism
  • Mitochondrial ADP, ATP Translocases* / chemistry
  • Mitochondrial ADP, ATP Translocases* / genetics
  • Mitochondrial ADP, ATP Translocases* / metabolism
  • Mitochondrial Membranes / metabolism
  • Molecular Dynamics Simulation
  • Mutation
  • Mutation, Missense
  • Oxidative Phosphorylation
  • Protein Binding
  • Saccharomyces cerevisiae Proteins* / chemistry
  • Saccharomyces cerevisiae Proteins* / genetics
  • Saccharomyces cerevisiae Proteins* / metabolism
  • Saccharomyces cerevisiae* / genetics
  • Saccharomyces cerevisiae* / metabolism

Substances

  • Cardiolipins
  • Saccharomyces cerevisiae Proteins
  • Mitochondrial ADP, ATP Translocases
  • PET9 protein, S cerevisiae
  • Adenine Nucleotide Translocator 1