Identification of predictive patient characteristics for assessing the probability of COVID-19 in-hospital mortality

PLOS Digit Health. 2024 Apr 23;3(4):e0000327. doi: 10.1371/journal.pdig.0000327. eCollection 2024 Apr.

Abstract

As the world emerges from the COVID-19 pandemic, there is an urgent need to understand patient factors that may be used to predict the occurrence of severe cases and patient mortality. Approximately 20% of SARS-CoV-2 infections lead to acute respiratory distress syndrome caused by the harmful actions of inflammatory mediators. Patients with severe COVID-19 are often afflicted with neurologic symptoms, and individuals with pre-existing neurodegenerative disease have an increased risk of severe COVID-19. Although collectively, these observations point to a bidirectional relationship between severe COVID-19 and neurologic disorders, little is known about the underlying mechanisms. Here, we analyzed the electronic health records of 471 patients with severe COVID-19 to identify clinical characteristics most predictive of mortality. Feature discovery was conducted by training a regularized logistic regression classifier that serves as a machine-learning model with an embedded feature selection capability. SHAP analysis using the trained classifier revealed that a small ensemble of readily observable clinical features, including characteristics associated with cognitive impairment, could predict in-hospital mortality with an accuracy greater than 0.85 (expressed as the area under the ROC curve of the classifier). These findings have important implications for the prioritization of clinical measures used to identify patients with COVID-19 (and, potentially, other forms of acute respiratory distress syndrome) having an elevated risk of death.

Grants and funding

BR, BAK and JCR gratefully acknowledge funding from the COMMIT (COvid-19 unMet MedIcal needs and associated research exTension) Program of the Gilead Foundation (grant number IN-US-983-6060). The sponsor had no involvement in the study’s design, data collection and analysis, decision to publish, or in the preparation of the manuscript. Information about the Gilead Foundation is available at https://www.gilead.com/purpose/gilead-foundation.