High germline mutation rates, but not extreme population outbreaks, influence genetic diversity in a keystone coral predator

PLoS Genet. 2024 Feb 12;20(2):e1011129. doi: 10.1371/journal.pgen.1011129. eCollection 2024 Feb.

Abstract

Lewontin's paradox, the observation that levels of genetic diversity (π) do not scale linearly with census population size (Nc) variation, is an evolutionary conundrum. The most extreme mismatches between π and Nc are found for highly abundant marine invertebrates. Yet, the influences of new mutations on π relative to extrinsic processes such as Nc fluctuations are unknown. Here, we provide the first germline mutation rate (μ) estimate for a marine invertebrate in corallivorous crown-of-thorns sea stars (Acanthaster cf. solaris). We use high-coverage whole-genome sequencing of 14 parent-offspring trios alongside empirical estimates of Nc in Australia's Great Barrier Reef to jointly examine the determinants of π in populations undergoing extreme Nc fluctuations. The A. cf. solaris mean μ was 9.13 x 10-09 mutations per-site per-generation (95% CI: 6.51 x 10-09 to 1.18 x 10-08), exceeding estimates for other invertebrates and showing greater concordance with vertebrate mutation rates. Lower-than-expected Ne (~70,000-180,000) and low Ne/Nc values (0.0047-0.048) indicated weak influences of population outbreaks on long-term π. Our findings are consistent with elevated μ evolving in response to reduced Ne and generation time length, with important implications for explaining high mutational loads and the determinants of genetic diversity in marine invertebrate taxa.

MeSH terms

  • Animals
  • Anthozoa* / genetics
  • Coral Reefs
  • Germ-Line Mutation / genetics
  • Mutation Rate
  • Population Density
  • Starfish / genetics

Grants and funding

This work was supported by the Australian Research Council (ARC DP190101593) granted to C.R., S.U., and G.W. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. I.P. and S.M.H. received salary from the funders.