Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site

Nat Commun. 2023 Nov 21;14(1):7593. doi: 10.1038/s41467-023-42098-5.

Abstract

The HIV-1 fusion peptide (FP) represents a promising vaccine target, but global FP sequence diversity among circulating strains has limited anti-FP antibodies to ~60% neutralization breadth. Here we evolve the FP-targeting antibody VRC34.01 in vitro to enhance FP-neutralization using site saturation mutagenesis and yeast display. Successive rounds of directed evolution by iterative selection of antibodies for binding to resistant HIV-1 strains establish a variant, VRC34.01_mm28, as a best-in-class antibody with 10-fold enhanced potency compared to the template antibody and ~80% breadth on a cross-clade 208-strain neutralization panel. Structural analyses demonstrate that the improved paratope expands the FP binding groove to accommodate diverse FP sequences of different lengths while also recognizing the HIV-1 Env backbone. These data reveal critical antibody features for enhanced neutralization breadth and potency against the FP site of vulnerability and accelerate clinical development of broad HIV-1 FP-targeting vaccines and therapeutics.

MeSH terms

  • Amino Acid Sequence
  • Antibodies, Neutralizing
  • HIV Antibodies
  • HIV Infections*
  • HIV-1* / genetics
  • Humans
  • Neutralization Tests
  • Peptides
  • Vaccines, Subunit
  • env Gene Products, Human Immunodeficiency Virus

Substances

  • HIV Antibodies
  • Antibodies, Neutralizing
  • Peptides
  • Vaccines, Subunit
  • env Gene Products, Human Immunodeficiency Virus