A predicted structure of NADPH Oxidase 1 identifies key components of ROS generation and strategies for inhibition

PLoS One. 2023 May 3;18(5):e0285206. doi: 10.1371/journal.pone.0285206. eCollection 2023.

Abstract

NADPH oxidase 1 (NOX1) is primarily expressed in epithelial cells and responsible for local generation of reactive oxygen species (ROS). By specifically manipulating the local redox microenvironment, NOX1 actively engages in epithelial immunity, especially in colorectal and pulmonary epithelia. To unravel the structural basis of NOX1 engaged epithelial immune processes, a predicted structure model was established using RaptorX deep learning models. The predicted structure model illustrates a 6-transmembrane domain structure, a FAD binding domain, and an NADPH binding/NOXO1 interacting region. The substrate/cofactor binding scheme with respect to this proposed model highly correlates with published reports and is verified in our site-directed mutagenesis assays. An electron transport chain, from NADPH to FAD and the two heme groups, was well supported by the predicted model. Through molecular docking analysis of various small molecule NOX1 inhibitors and subsequent experimental validation, we identified pronounced active sites for potent NOX1 inhibition. Specifically, LEU60, VAL71, MET181, LEU185, HIS208, PHE211, TYR214, and TYR280 in the transmembrane domain form an active pocket for insertion of the small molecule inhibitors to inhibit electron transfer between the heme groups, thus affecting extracellular ROS generation. Altogether, our study provides structural information to help elucidate the role of NOX1 in epithelial generation of ROS and sheds light on the development of therapeutics for NOX1 related illnesses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Molecular Docking Simulation
  • NADH, NADPH Oxidoreductases* / metabolism
  • NADP
  • NADPH Oxidase 1 / genetics
  • NADPH Oxidases* / metabolism
  • Reactive Oxygen Species / metabolism

Substances

  • NADPH Oxidase 1
  • Reactive Oxygen Species
  • NADPH Oxidases
  • NADP
  • NADH, NADPH Oxidoreductases

Grants and funding

This research was funded in part by National Key R&D Program of China 2019YFA0906003 (R.D.Y.), the Science, Technology and Innovation Commission of Shenzhen Municipality GXWD20201231105722002-20200831175432002 (R.D.Y.), National Natural Science Foundation of China (32070950 to R.D.Y.), Shenzhen-Hong Kong Cooperation Zone for Technology and Innovation (HZQB-KCZYB-2020056) (R.D.Y.), the Kobilka Institute of Innovative Drug Discovery (R.D.Y.), the Ganghong Young Scholar Development Fund (S.L., R.D.Y.), and the Undergraduate Research Award of The Chinese University of Hong Kong, Shenzhen (Y.L.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. There was no additional external funding received for this study.