Metagenomic Deep Sequencing for Orbital Inflammatory Disease

Ocul Immunol Inflamm. 2024 Jul;32(5):718-721. doi: 10.1080/09273948.2023.2199061. Epub 2023 Apr 17.

Abstract

Purpose: Orbital inflammatory disease (OID) is a heterogeneous group of immunologic disorders whose etiology is often non-specific despite routine investigation. In this proof-of-concept study, metagenomic deep sequencing (MDS) is applied to examine host gene expression in two subtypes of OID.

Methods: Prospectively collected lacrimal gland tissue from patients with OID was processed for MDS. Differential gene expression analysis was performed to evaluate for host transcriptome signatures. Proof-of-concept comparison was made between histologically confirmed samples of idiopathic dacryoadenitis and IgG4-related disease (IgG4-RD).

Results: Twelve genes were identified to be differentially expressed between idiopathic dacryoadenitis and IgG4-RD. Differences in innate humoral immunity gene expression were observed. Several additional genes of interests were also found to be upregulated in idiopathic dacryoadenitis.

Conclusions: A unique transcriptome signature was found when comparing idiopathic dacryoadenitis to IgG4-RD. This suggests that MDS can identify differentially expressed genes in OID. Such insight could potentially provide a better understanding of host gene expression and the inflammatory pathways involved in OID.

Keywords: Dacryoadenitis; IgG4-related disease; metagenomic deep sequencing; orbital inflammatory disease; transcriptomics.

MeSH terms

  • Adult
  • Aged
  • Dacryocystitis* / diagnosis
  • Dacryocystitis* / genetics
  • Female
  • Gene Expression Profiling / methods
  • Gene Expression Regulation
  • High-Throughput Nucleotide Sequencing*
  • Humans
  • Immunoglobulin G4-Related Disease / diagnosis
  • Immunoglobulin G4-Related Disease / genetics
  • Lacrimal Apparatus
  • Male
  • Metagenomics* / methods
  • Middle Aged
  • Orbital Pseudotumor / diagnosis
  • Orbital Pseudotumor / genetics
  • Proof of Concept Study
  • Prospective Studies
  • Transcriptome