Bioinformatic and Machine Learning Applications in Melanoma Risk Assessment and Prognosis: A Literature Review

Genes (Basel). 2021 Oct 30;12(11):1751. doi: 10.3390/genes12111751.

Abstract

Over 100,000 people are diagnosed with cutaneous melanoma each year in the United States. Despite recent advancements in metastatic melanoma treatment, such as immunotherapy, there are still over 7000 melanoma-related deaths each year. Melanoma is a highly heterogenous disease, and many underlying genetic drivers have been identified since the introduction of next-generation sequencing. Despite clinical staging guidelines, the prognosis of metastatic melanoma is variable and difficult to predict. Bioinformatic and machine learning analyses relying on genetic, clinical, and histopathologic inputs have been increasingly used to risk stratify melanoma patients with high accuracy. This literature review summarizes the key genetic drivers of melanoma and recent applications of bioinformatic and machine learning models in the risk stratification of melanoma patients. A robustly validated risk stratification tool can potentially guide the physician management of melanoma patients and ultimately improve patient outcomes.

Keywords: bioinformatics; deep learning; machine learning; melanoma; melanoma genomics.

Publication types

  • Review

MeSH terms

  • Computational Biology / methods*
  • Deep Learning
  • Gene Expression Regulation, Neoplastic
  • Gene Regulatory Networks*
  • Genetic Predisposition to Disease
  • Genetic Variation
  • Humans
  • Melanoma / genetics
  • Melanoma / pathology*
  • Melanoma, Cutaneous Malignant
  • Prognosis
  • Risk Assessment
  • Skin Neoplasms / genetics
  • Skin Neoplasms / pathology*