Frequency compounding is an ultrasound imaging technique used to improve signal-to-noise ratio (SNR). In this work, a nonlinear frequency compounding (NLFC) method was introduced, and its application in noninvasive tissue thermometry investigated. The NLFC method was used to produce two-dimensional maps of the temperature sensitive change in backscattered energy of acoustic harmonics (hCBE), during heating of ex vivo porcine tissue with a low intensity focused ultrasound transducer. A hCBE-to-temperature calibration was performed, and temperature maps produced and compared with a theoretical COMSOL based model. Last, a comparative study of the NLFC and previously used nonlinear single frequency (NLSF) methods was completed to quantify the improvement in SNR of the produced hCBE maps. When using the NLFC method, a SNR of 6.06 ± 1.28 was found. SNR values of 3.70 ± 0.53 and 4.38 ± 0.84 were found while using central frequencies of 4.31 and 5.43 MHz, respectively, with the NLSF method. This translates to an improvement of (64.13 ± 4.16)% over the 4.31 MHz NLSF, and (38.72 ± 2.97)% over the 5.43 MHz NLSF methods overall. It was concluded that the NLFC method can produce hCBE and temperature maps with superior image SNR over the NLSF method.