Haploflow: strain-resolved de novo assembly of viral genomes

Genome Biol. 2021 Jul 19;22(1):212. doi: 10.1186/s13059-021-02426-8.

Adrian Fritz^{1

2}, Andreas Bremges^{1

2}, Zhi-Luo Deng¹, Till Robin Lesker^{1

2}, Jasper Götting^{2

3}, Tina Ganzenmueller^{2

3

4}, Alexander Sczyrba^{1

5}, Alexander Dilthey^{6

7}, Frank Klawonn^{8

9}, Alice Carolyn McHardy^{10

11}

¹ Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany.
² German Centre for Infection Research (DZIF), Site Hannover-Braunschweig, Braunschweig, Germany.
³ Institute of Virology, Hannover Medical School, Hannover, Germany.
⁴ Institute for Medical Virology, University Hospital Tuebingen, Tuebingen, Germany.
⁵ Faculty of Technology and Center for Biotechnology, Bielefeld University, Bielefeld, Germany.
⁶ Institute of Medical Microbiology and Hospital Hygiene, University Hospital, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany.
⁷ Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, MD, 20892, USA.
⁸ Department of Computer Science, Ostfalia University of Applied Sciences, Wolfenbuettel, Germany.
⁹ Biostatistics Group, Helmholtz Centre for Infection Research, Braunschweig, Germany.
¹⁰ Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany. alice.mchardy@helmholtz-hzi.de.
¹¹ German Centre for Infection Research (DZIF), Site Hannover-Braunschweig, Braunschweig, Germany. alice.mchardy@helmholtz-hzi.de.

No abstract available

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