Sequence of Events during Peptide Unbinding from RNase S: A Complete Experimental Description

J Phys Chem Lett. 2021 Jun 3;12(21):5201-5207. doi: 10.1021/acs.jpclett.1c01155. Epub 2021 May 26.

Abstract

The phototriggered unbinding of the intrinsically disordered S-peptide from the RNase S complex is studied with the help of transient IR spectroscopy, covering a wide range of time scales from 100 ps to 10 ms. To that end, an azobenzene moiety has been linked to the S-peptide in a way that its helicity is disrupted by light, thereby initiating its complete unbinding. The full sequence of events is observed, starting from unfolding of the helical structure of the S-peptide on a 20 ns time scale while still being in the binding pocket of the S-protein, S-peptide unbinding after 300 μs, and the structural response of the S-protein after 3 ms. With regard to the S-peptide dynamics, the binding mechanism can be classified as an induced fit, while the structural response of the S-protein is better described as conformational selection.

MeSH terms

  • Amino Acid Sequence
  • Azo Compounds / chemistry
  • Azo Compounds / radiation effects
  • Intrinsically Disordered Proteins / chemistry
  • Intrinsically Disordered Proteins / metabolism*
  • Kinetics
  • Light
  • Peptides / chemistry
  • Peptides / metabolism*
  • Protein Binding / radiation effects
  • Protein Conformation, alpha-Helical
  • Protein Unfolding / radiation effects
  • Ribonucleases / chemistry
  • Ribonucleases / metabolism*

Substances

  • Azo Compounds
  • Intrinsically Disordered Proteins
  • Peptides
  • Ribonucleases
  • ribonuclease S