Genomic epidemiological analysis identifies high relapse among individuals with recurring tuberculosis and provides evidence of recent household-related transmission of tuberculosis in Ghana

Int J Infect Dis. 2021 May:106:13-22. doi: 10.1016/j.ijid.2021.02.110. Epub 2021 Mar 2.

Abstract

Objective: To retrospectively investigate the cause of recurring tuberculosis (rcTB) among participants with pulmonary TB recruited from a prospective population-based study conducted between July 2012 and December 2015.

Methods: Mycobacterium tuberculosis complex isolates obtained from rcTB cases were characterized by standard mycobacterial genotyping tools, whole-genome sequencing, and phylogenetic analysis carried out to assess strain relatedness.

Results: The majority (58.3%, 21/36) of study participants with rcTB episodes had TB recurrence within 12 months post treatment. TB strains with isoniazid (INH) resistance were found in 19.4% (7/36) of participants at the primary episode, of which 29% (2/7) were also rifampicin-resistant. On TB recurrence, an INH-resistant strain was found in a larger proportion of participants, 27.8% (10/36), of which 40% (4/10) were MDR-TB strains. rcTB was attributed to relapse (same strain) in 75.0% (27/36) of participants and 25.0% (9/36) to re-infection.

Conclusion: Our findings indicate that previous unresolved infectiondue to inadequate treatment, may be the major cause of rcTB.

Keywords: Molecular epidemiology; Mycobacterium africanum; Mycobacterium tuberculosis; Relapse; Tuberculosis; Whole-genome sequencing.

MeSH terms

  • Adult
  • Antitubercular Agents / therapeutic use
  • Female
  • Genomics*
  • Ghana / epidemiology
  • Housing*
  • Humans
  • Male
  • Middle Aged
  • Mutation
  • Mycobacterium tuberculosis / genetics*
  • Mycobacterium tuberculosis / physiology
  • Phylogeny
  • Recurrence
  • Retrospective Studies
  • Tuberculosis / drug therapy
  • Tuberculosis / epidemiology*
  • Tuberculosis / transmission*
  • Whole Genome Sequencing

Substances

  • Antitubercular Agents