A Bait-Trap Assay to Characterize Soil Microbes that Exhibit Chemotaxis to Root Exudates

Methods Mol Biol. 2021:2232:283-289. doi: 10.1007/978-1-0716-1040-4_21.

Abstract

Here, we describe a novel "bait-trap" assay, which facilitates capture of soil microorganisms that exhibit chemotaxis to chemical attractants, such as root exudates. These multi-population assemblages represent potential guilds and can be characterized using a wide-range of culture-dependent and culture-independent methods. While in this example, we use root exudates as bait, any water-soluble compound(s) could be used. Hence, the potential applications for the assay are diverse.

Keywords: Chemical language; Chemotaxis; Plant-microbe interactions; Rhizosphere; Signaling.

MeSH terms

  • Chemotaxis / genetics*
  • Plant Exudates / metabolism*
  • Plant Roots / genetics
  • Plant Roots / microbiology*
  • Rhizosphere
  • Soil / chemistry
  • Soil Microbiology*

Substances

  • Plant Exudates
  • Soil