Genetic characterization and virulence of a carbapenem-resistant Raoultella ornithinolytica isolated from well water carrying a novel megaplasmid containing blaNDM-1

Environ Pollut. 2020 May:260:114041. doi: 10.1016/j.envpol.2020.114041. Epub 2020 Jan 22.

Abstract

Infections caused by carbapenem-resistant Enterobacteriaceae are a growing concern worldwide. Raoultella ornithinolytica is a species in the Enterobacteriaceae family which can cause hospital-acquired infections and is sporadically reported as carbapenem-resistant from human and environmental sources. In this study, we firstly report on an NDM-1-producing R. ornithinolytica, Rao166, isolated from drinking water in an animal cultivation area in China. In addition to carbapenem-resistance, Rao166 was resistant to several other antibiotics including gentamicin, sulfamethoxazole-trimethoprim, tetracycline and fosfomycin. Rao166 carried a novel IncFIC-type megaplasmid, 382,325 bp in length (pRAO166a). A multidrug resistance region, 60,600 bp in length, was identified in the plasmid containing an aac(3)-IId-like gene, aac(6')-Ib-cr, blaDHA-1, blaTEM-1B, blaCTX-M-3, blaOXA-1, blaNDM-1, qnrB4, catB3, arr-3, sul1, and tet(D). Results from virulence assays implied that Rao166 has considerable pathogenic potential. Although pRAO166a was found to be non-transmissible, dissemination of the NDM-1 producing strain may occur from well water to humans or animals through cross-contamination during food preparation or directly via drinking water, and potentially lead to difficult-to-treat infections. Thus, contamination of well water by this carbapenem-resistant and presumptively virulent strain of R. ornithinolytica should be considered a potential public health risk.

Keywords: MDR megaplasmid; Raoultella ornithinolytica; Well water; bla(NDM-1); virulence.

MeSH terms

  • Animals
  • Anti-Bacterial Agents
  • Carbapenems*
  • China
  • Drug Resistance, Bacterial / genetics*
  • Enterobacteriaceae / genetics*
  • Enterobacteriaceae / isolation & purification
  • Humans
  • Microbial Sensitivity Tests
  • Plasmids
  • Virulence / genetics
  • Water
  • beta-Lactamases / metabolism*

Substances

  • Anti-Bacterial Agents
  • Carbapenems
  • Water
  • beta-Lactamases
  • beta-lactamase NDM-1

Supplementary concepts

  • Raoultella ornithinolytica