An RNase H-powered DNA walking machine for sensitive detection of RNase H and the screening of related inhibitors

Nanoscale. 2020 Jan 23;12(3):1673-1679. doi: 10.1039/c9nr07550j.

Abstract

Ribonuclease H (RNase H), an intracellular ribonuclease, plays a crucial role in cellular processes and especially relates to many disease processes. Here, we report a novel signal amplification strategy based on an RNase H-powered DNA walking machine for specific and sensitive RNase H activity detection. The DNA walking machine is composed of a small quantity of DNA walker strands and abundant FAM-labeled DNA-RNA chimeric strands on a single gold nanoparticle (AuNP). RNase H can specifically degrade the RNA fragment in a DNA-RNA hybrid duplex and trigger the autonomous movement of a DNA walker strand on the AuNP surface. During this process, each step of the walking can release the FAM-labeled RNA from the surface of the AuNP, realizing the signal amplification for RNase H sensing. This method has been successfully utilized for RNase H activity detection in a complex system and applied for screening of related inhibitors. Therefore, our RNase H-powered DNA walking machine gives a novel platform for RNase H activity detection and RNase H-associated drug discovery.

MeSH terms

  • DNA / chemistry*
  • Gold / chemistry*
  • Metal Nanoparticles / chemistry*
  • Nucleic Acid Heteroduplexes / chemistry*
  • RNA / chemistry*
  • Ribonuclease H / analysis*
  • Ribonuclease H / chemistry

Substances

  • Nucleic Acid Heteroduplexes
  • RNA
  • Gold
  • DNA
  • Ribonuclease H