Characterization of a Dehydratase and Methyltransferase in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides in Lachnospiraceae

Chembiochem. 2020 Jan 15;21(1-2):190-199. doi: 10.1002/cbic.201900483. Epub 2019 Nov 4.

Abstract

As a result of the exponential increase in genomic data, discovery of novel ribosomally synthesized and post-translationally modified peptide natural products (RiPPs) has progressed rapidly in the past decade. The lanthipeptides are a major subset of RiPPs. Through genome mining we identified a novel lanthipeptide biosynthetic gene cluster (lah) from Lachnospiraceae bacterium C6A11, an anaerobic bacterium that is a member of the human microbiota and which is implicated in the development of host disease states such as type 2 diabetes and resistance to Clostridium difficile colonization. The lah cluster encodes at least seven putative precursor peptides and multiple post-translational modification (PTM) enzymes. Two unusual class II lanthipeptide synthetases LahM1/M2 and a substrate-tolerant S-adenosyl-l-methionine (SAM)-dependent methyltransferase LahSB are biochemically characterized in this study. We also present the crystal structure of LahSB in complex with product S-adenosylhomocysteine. This study sets the stage for further exploration of the final products of the lah pathway as well as their potential physiological functions in human/animal gut microbiota.

Keywords: PTMs; RiPPs; dehydration; lanthipeptides; methyltransferases.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biological Products / metabolism*
  • Clostridiales / genetics
  • Clostridiales / metabolism*
  • Hydro-Lyases / metabolism*
  • Methyltransferases / metabolism*
  • Peptides / metabolism*
  • Protein Processing, Post-Translational
  • Ribosomes / metabolism*

Substances

  • Biological Products
  • Peptides
  • Methyltransferases
  • Hydro-Lyases