Design And Synthesis Of An Azabicyclic Nucleoside Phosphoramidite For Oligonucleotide Antisense Constructs

Nucleosides Nucleotides Nucleic Acids. 2020;39(1-3):384-406. doi: 10.1080/15257770.2019.1646916. Epub 2019 Aug 5.

Abstract

We report the synthesis and biophysical evaluation of an azabicycle dinucleotide with restricted γ, β, and ε torsion angles, featuring the introduction of a piperidine ring that locks the conformation of the nucleoside into an RNA-type nucleic acid. The conceptual basis of the design is predicated upon the notion that the conformation of the phosphate group linking two RNA nucleotides can be approximated with an azabicyclic phosphoramidite which may also benefit from a unique stereoelectronic effect.

Keywords: antisense; azabicyclic nucleosides; conformational restriction.

MeSH terms

  • Azabicyclo Compounds / chemical synthesis
  • Azabicyclo Compounds / chemistry*
  • Chemistry Techniques, Synthetic
  • Drug Design*
  • Magnetic Resonance Spectroscopy
  • Molecular Structure
  • Nucleic Acid Conformation
  • Nucleosides / chemistry*
  • Oligonucleotides, Antisense / chemistry*
  • Organophosphorus Compounds / chemistry*

Substances

  • Azabicyclo Compounds
  • Nucleosides
  • Oligonucleotides, Antisense
  • Organophosphorus Compounds
  • phosphoramidite