iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology

Christopher Holdgraf; Stefan Appelhoff; Stephan Bickel; Kristofer Bouchard; Sasha D'Ambrosio; Olivier David; Orrin Devinsky; Benjamin Dichter; Adeen Flinker; Brett L Foster; Krzysztof J Gorgolewski; Iris Groen; David Groppe; Aysegul Gunduz; Liberty Hamilton; Christopher J Honey; Mainak Jas; Robert Knight; Jean-Philippe Lachaux; Jonathan C Lau; Christopher Lee-Messer; Brian N Lundstrom; Kai J Miller; Jeffrey G Ojemann; Robert Oostenveld; Natalia Petridou; Gio Piantoni; Andrea Pigorini; Nader Pouratian; Nick F Ramsey; Arjen Stolk; Nicole C Swann; François Tadel; Bradley Voytek; Brian A Wandell; Jonathan Winawer; Kirstie Whitaker; Lyuba Zehl; Dora Hermes

doi:10.1038/s41597-019-0105-7

iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology

Sci Data. 2019 Jun 25;6(1):102. doi: 10.1038/s41597-019-0105-7.

Authors

Christopher Holdgraf^{1

2}, Stefan Appelhoff³, Stephan Bickel⁴, Kristofer Bouchard⁵, Sasha D'Ambrosio⁶, Olivier David⁷, Orrin Devinsky⁸, Benjamin Dichter⁹, Adeen Flinker⁸, Brett L Foster¹⁰, Krzysztof J Gorgolewski⁹, Iris Groen¹¹, David Groppe¹², Aysegul Gunduz¹³, Liberty Hamilton¹⁴, Christopher J Honey¹⁵, Mainak Jas¹⁶, Robert Knight¹⁷, Jean-Philippe Lachaux¹⁸, Jonathan C Lau¹⁹, Christopher Lee-Messer⁹, Brian N Lundstrom²⁰, Kai J Miller²¹, Jeffrey G Ojemann²², Robert Oostenveld²³, Natalia Petridou²⁴, Gio Piantoni²⁵, Andrea Pigorini⁶, Nader Pouratian²⁶, Nick F Ramsey²⁵, Arjen Stolk¹⁷, Nicole C Swann²⁷, François Tadel^{7

28}, Bradley Voytek²⁹, Brian A Wandell⁹, Jonathan Winawer¹¹, Kirstie Whitaker^{30

31}, Lyuba Zehl³², Dora Hermes^{33

34

35}

Affiliations

¹ The Berkeley Institute for Data Science, Berkeley, USA. choldgraf@berkeley.edu.
² University of California at Berkeley, Berkeley, USA. choldgraf@berkeley.edu.
³ Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany.
⁴ Feinstein Institute for Medical Research, Hofstra Northwell School of Medicine, New York, USA.
⁵ Biological Systems and Engineering Division, Lawrence Berkeley Lab, Berkeley, USA.
⁶ Università degli Studi di Milano, Milan, Italy.
⁷ Universite Grenoble Alpes, Inserm, France.
⁸ NYU School of Medicine, New York, USA.
⁹ Stanford University, Stanford, USA.
¹⁰ Baylor College of Medicine, Houston, Texas, USA.
¹¹ New York University, New York, USA.
¹² Krembil Research Institute, Toronto, USA.
¹³ University of Florida, Gainesville, USA.
¹⁴ The University of Texas at Austin, Austin, USA.
¹⁵ Johns Hopkins University, Baltimore, USA.
¹⁶ Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Med. School, Charlestown, USA.
¹⁷ University of California at Berkeley, Berkeley, USA.
¹⁸ Centre de Recherche en Neurosciences de Lyon, INSERM, Lyon, France.
¹⁹ Department of Clinical Neurological Sciences, Division of Neurosurgery, Western University, London, Canada.
²⁰ Mayo Clinic, Rochester, USA.
²¹ Department of Neurosurgery, Mayo Clinic, Rochester, USA.
²² University of Washington, Washington, USA.
²³ Radboud University, Donders Institute for Brain, Cognition and Behaviour, Karolinska Institutet, Nijmegen, The Netherlands.
²⁴ Center for Image Sciences, University Medical Center Utrecht, Utrecht, The Netherlands.
²⁵ UMC Utrecht Brain Center, Utrecht, The Netherlands.
²⁶ David Geffen School of Medicine at UCLA, California, USA.
²⁷ University of Oregon, Oregon, USA.
²⁸ CHU Grenoble Alpes, GIN, Grenoble, France.
²⁹ UC San Diego, San Diego, USA.
³⁰ Alan Turing Institute, London, UK.
³¹ Department of Psychiatry, University of Cambridge, Cambridge, UK.
³² Institute for Neuroscience and Medicine (INM-1), Forschungszentrum Jülich GmbH, Jülich, Germany.
³³ Stanford University, Stanford, USA. dorahermes@gmail.com.
³⁴ UMC Utrecht Brain Center, Utrecht, The Netherlands. dorahermes@gmail.com.
³⁵ Department of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, USA. dorahermes@gmail.com.

Abstract

The Brain Imaging Data Structure (BIDS) is a community-driven specification for organizing neuroscience data and metadata with the aim to make datasets more transparent, reusable, and reproducible. Intracranial electroencephalography (iEEG) data offer a unique combination of high spatial and temporal resolution measurements of the living human brain. To improve internal (re)use and external sharing of these unique data, we present a specification for storing and sharing iEEG data: iEEG-BIDS.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Brain / diagnostic imaging*
Brain / physiology*
Datasets as Topic
Electroencephalography*
Humans
Information Storage and Retrieval / standards
Neuroimaging*

Abstract

Publication types

MeSH terms

Grants and funding