A pathogenic CtBP1 missense mutation causes altered cofactor binding and transcriptional activity

Neurogenetics. 2019 Aug;20(3):129-143. doi: 10.1007/s10048-019-00578-1. Epub 2019 Apr 30.

Abstract

We previously reported a pathogenic de novo p.R342W mutation in the transcriptional corepressor CTBP1 in four independent patients with neurodevelopmental disabilities [1]. Here, we report the clinical phenotypes of seven additional individuals with the same recurrent de novo CTBP1 mutation. Within this cohort, we identified consistent CtBP1-related phenotypes of intellectual disability, ataxia, hypotonia, and tooth enamel defects present in most patients. The R342W mutation in CtBP1 is located within a region implicated in a high affinity-binding cleft for CtBP-interacting proteins. Unbiased proteomic analysis demonstrated reduced interaction of several chromatin-modifying factors with the CtBP1 W342 mutant. Genome-wide transcriptome analysis in human glioblastoma cell lines expressing -CtBP1 R342 (wt) or W342 mutation revealed changes in the expression profiles of genes controlling multiple cellular processes. Patient-derived dermal fibroblasts were found to be more sensitive to apoptosis during acute glucose deprivation compared to controls. Glucose deprivation strongly activated the BH3-only pro-apoptotic gene NOXA, suggesting a link between enhanced cell death and NOXA expression in patient fibroblasts. Our results suggest that context-dependent relief of transcriptional repression of the CtBP1 mutant W342 allele may contribute to deregulation of apoptosis in target tissues of patients leading to neurodevelopmental phenotypes.

Keywords: C-terminal binding protein; Chromatin modifying complex; CtBP1; Neurodevelopmental disease; p.R342W mutation.

Publication types

  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Alcohol Oxidoreductases / genetics*
  • Alcohol Oxidoreductases / metabolism
  • Alleles
  • Apoptosis
  • Ataxia / complications
  • Ataxia / genetics
  • Brain Neoplasms / genetics
  • Cell Line, Tumor
  • Child
  • Child, Preschool
  • Chromatin / chemistry
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism
  • Female
  • Fibroblasts / metabolism
  • Glioblastoma / genetics
  • Humans
  • Intellectual Disability / complications
  • Intellectual Disability / genetics
  • Male
  • Muscle Hypotonia / complications
  • Muscle Hypotonia / genetics
  • Mutation, Missense*
  • Phenotype
  • Protein Binding
  • Proteomics
  • Tooth Abnormalities / complications
  • Tooth Abnormalities / genetics
  • Young Adult

Substances

  • Chromatin
  • DNA-Binding Proteins
  • Alcohol Oxidoreductases
  • C-terminal binding protein