Heterochiral Ala/(αMe)Aze sequential oligopeptides: Synthesis and conformational study

J Pept Sci. 2019 May;25(5):e3165. doi: 10.1002/psc.3165. Epub 2019 Mar 27.

Abstract

α-Amino acid residues with a ϕ,ψ constrained conformation are known to significantly bias the peptide backbone 3D structure. An intriguing member of this class of compounds is (αMe)Aze, characterized by an Nα -alkylated four-membered ring and Cα -methylation. We have already reported that (S)-(αMe)Aze, when followed by (S)-Ala in the homochiral dipeptide sequential motif -(S)-(αMe)Aze-(S)-Ala-, tends to generate the unprecedented γ-bend ribbon conformation, as formation of a regular, fully intramolecularly H-bonded γ-helix is precluded, due to the occurrence of a tertiary amide bond every two residues. In this work, we have expanded this study to the preparation and 3D structural analysis of the heterochiral (S)-Ala/(R)-(αMe)Aze sequential peptides from dimer to hexamer. Our conformational results show that members of this series may fold in type-II β-turns or in γ-turns depending on the experimental conditions.

Keywords: X-ray diffraction; azetidines; heterochiral sequences; peptide conformation; peptide synthesis; β/γ-turns.

MeSH terms

  • Alanine / chemistry*
  • Azetidinecarboxylic Acid / chemistry*
  • Nuclear Magnetic Resonance, Biomolecular
  • Oligopeptides / chemical synthesis*
  • Oligopeptides / chemistry*
  • Protein Conformation
  • X-Ray Diffraction

Substances

  • Oligopeptides
  • Azetidinecarboxylic Acid
  • Alanine