Pedobacter pollutisoli sp. nov., Isolated from Tetrabromobisphenol A-Contaminated Soil

Curr Microbiol. 2019 Apr;76(4):442-447. doi: 10.1007/s00284-019-01643-6. Epub 2019 Feb 13.

Abstract

A Gram-stain negative, strictly aerobic, non-spore forming, non-motile, rod-shaped bacterium, designated TBBPA-24T, was isolated from tetrabromobisphenol A-contaminated soil in China. Phylogenetic analysis based on the 16S rRNA gene sequences showed that strain TBBPA-24T was most closely related to Pedobacter nanyangensis Q4T (96.5%) and Pedobacter 'zeaxanthinifaciens' TDMA-5T (96.1%). Chemotaxonomic analysis revealed that strain TBBPA-24T possessed MK-7 as the major respiratory quinone and lipid, aminolipid, phospholipid, phosphatidylethanolamine, and phosphoaminolipid as the major polar lipid. The major fatty acids were iso-C15:0 (40.2%), summed feature 3 (C16:1ω6c and/or C16:1ω7c, 25.6%) and iso-C17:0 3-OH (16.4%). The genomic DNA G+C content of strain TBBPA-24T was 43.9 mol%. Based on the phylogenetic, phenotypic characteristics, and chemotaxonomic data, strain TBBPA-24T is considered a novel species of the genus Pedobacter, for which the name Pedobacter pollutisoli sp. nov. is proposed. The type strain TBBPA-24T (= KCTC 62314T = CCTCC AB 2017244T) is proposed.

MeSH terms

  • Base Composition
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Nucleic Acid Hybridization
  • Pedobacter / chemistry
  • Pedobacter / classification*
  • Pedobacter / isolation & purification
  • Pedobacter / physiology*
  • Phospholipids / chemistry
  • Phylogeny*
  • Polybrominated Biphenyls / chemistry*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil / chemistry
  • Soil Microbiology*
  • Soil Pollutants / chemistry*
  • Species Specificity
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / chemistry

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Phospholipids
  • Polybrominated Biphenyls
  • RNA, Ribosomal, 16S
  • Soil
  • Soil Pollutants
  • Vitamin K 2
  • menaquinone 7
  • tetrabromobisphenol A