Design, synthesis and activity of light deactivatable microRNA inhibitor

Bioorg Chem. 2018 Oct:80:492-497. doi: 10.1016/j.bioorg.2018.07.003. Epub 2018 Jul 2.

Abstract

miRNAs are key cellular regulators and their dysregulation is associated with many human diseases. They are usually produced locally in a spatiotemporally controlled manner to target mRNAs and regulate gene expression. Thus, developing chemical tools for manipulating miRNA with spatiotemporal precise is critical for studying miRNA. Herein, we designed a strategy to control miRNA biogenesis with light controllable inhibitor targeting the pre-miRNA processing by Dicer. By conjugating two non-inhibiting units, a low affinity Dicer inhibitor and a pre-miRNA binder, through a photocleavable linker, the bifunctional molecule obtained could inhibit miRNA production. Taking advantage of the photocleavable property of the linker, the bifunctional inhibitor can be fragmented into separate non-inhibiting units and therefore be deactivated by light. We expect that this strategy could be applied to generate chemical biological tools that allow light-mediated spatiotemporal control of miRNA maturation and contribute to the study of miRNA function.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • DEAD-box RNA Helicases / metabolism*
  • Drug Design
  • Humans
  • Light
  • MicroRNAs / antagonists & inhibitors
  • MicroRNAs / genetics
  • MicroRNAs / metabolism*
  • RNA Processing, Post-Transcriptional / drug effects
  • RNA Processing, Post-Transcriptional / radiation effects
  • Recombinant Proteins / metabolism
  • Ribonuclease III / metabolism*
  • Small Molecule Libraries / chemistry*
  • Small Molecule Libraries / pharmacology*
  • Transcription, Genetic / drug effects
  • Transcription, Genetic / radiation effects

Substances

  • MIRN21 microRNA, human
  • MicroRNAs
  • Recombinant Proteins
  • Small Molecule Libraries
  • DICER1 protein, human
  • Ribonuclease III
  • DEAD-box RNA Helicases