Kinome-wide transcriptional profiling of uveal melanoma reveals new vulnerabilities to targeted therapeutics

Pigment Cell Melanoma Res. 2018 Mar;31(2):253-266. doi: 10.1111/pcmr.12650. Epub 2017 Oct 15.

Abstract

Metastatic uveal melanoma (UM) is invariably fatal, usually within a year of diagnosis. There are currently no effective therapies, and clinical studies employing kinase inhibitors have so far demonstrated limited success. This is despite common activating mutations in GNAQ/11 genes, which trigger signalling pathways that might predispose tumours to a variety of targeted drugs. In this study, we have profiled kinome expression network dynamics in various human ocular melanomas. We uncovered a shared transcriptional profile in human primary UM samples and across a variety of experimental cell-based models. The poor overall response of UM cells to FDA-approved kinase inhibitors contrasted with much higher sensitivity to the bromodomain inhibitor JQ1, a broad transcriptional repressor. Mechanistically, we identified a repressed FOXM1-dependent kinase subnetwork in JQ1-exposed cells that contained multiple cell cycle-regulated protein kinases. Consistently, we demonstrated vulnerability of UM cells to inhibitors of mitotic protein kinases within this network, including the investigational PLK1 inhibitor BI6727. We conclude that analysis of kinome-wide signalling network dynamics has the potential to reveal actionable drug targets and inhibitors of potential therapeutic benefit for UM patients.

Keywords: BI6727; JQ1; PLK1; kinase inhibitor; kinome; transcriptomics; uveal melanoma.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Azepines / pharmacology
  • Cell Cycle Proteins
  • Cell Line, Tumor
  • Computational Biology
  • Down-Regulation / drug effects
  • Forkhead Box Protein M1 / metabolism
  • Gene Expression Profiling*
  • Gene Expression Regulation, Neoplastic / drug effects
  • Gene Regulatory Networks / drug effects
  • Humans
  • Melanoma / genetics*
  • Melanoma / pathology
  • Molecular Targeted Therapy*
  • Nuclear Proteins / metabolism
  • Protein Kinase Inhibitors / pharmacology
  • Protein Kinases / metabolism*
  • Proto-Oncogene Proteins c-myc / metabolism
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Signal Transduction / drug effects
  • Transcription Factors / metabolism
  • Transcriptome / genetics
  • Triazoles / pharmacology
  • Uveal Neoplasms / genetics*
  • Uveal Neoplasms / pathology

Substances

  • (+)-JQ1 compound
  • Azepines
  • BRD4 protein, human
  • Cell Cycle Proteins
  • Forkhead Box Protein M1
  • Nuclear Proteins
  • Protein Kinase Inhibitors
  • Proto-Oncogene Proteins c-myc
  • RNA, Messenger
  • Transcription Factors
  • Triazoles
  • Protein Kinases

Supplementary concepts

  • Uveal melanoma