Association of HTRA1 rs11200638 with age-related macular degeneration (AMD) in Brazilian patients

Ophthalmic Genet. 2018 Jan-Feb;39(1):46-50. doi: 10.1080/13816810.2017.1354382. Epub 2017 Aug 28.

Abstract

Age-related macular degeneration is a multifactorial disease that can lead to vision impairment in older individuals. Although the etiology of age-related macular degeneration remains unknown, risk factors include age, ethnicity, smoking, hypertension, obesity, and genetic factors. Two main loci have been identified through genome-wide association studies, on chromosomes 1 and 10. Among the variants located at the 10q26 region, rs11200638, located at the HTRA1 gene promoter, has been associated with age-related macular degeneration in several populations and is considered the main polymorphism. We conducted a replication case-control study to analyze the frequency and participation of rs11200638 in the etiology of age-related macular degeneration in a sample of patients and controls from the State of São Paulo, Brazil, through polymerase chain reaction and enzymatic digestion. The frequency of the A allele was 57.60% in patients with age-related macular degeneration and 36.45% in controls (p value < 1e-07), representing a 2.369-fold higher risk factor for the disease. Both the AA and AG genotypes were observed more frequently in the age-related macular degeneration group compared to the control group (p = 1.21e-07 and 0.0357, respectively). No statistically significant results were observed after stratification in dry versus wet types or advanced versus non-advanced forms. To our knowledge, this is the first time the association between rs11200638 and overall age-related macular degeneration has been reported in South America.

Keywords: 10q26; AMD; SNP; complex disease; genetic polymorphism.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Brazil / epidemiology
  • Case-Control Studies
  • Chromosomes, Human, Pair 10 / genetics
  • Female
  • Gene Frequency
  • Genetic Association Studies
  • Geographic Atrophy / ethnology
  • Geographic Atrophy / genetics*
  • High-Temperature Requirement A Serine Peptidase 1 / genetics*
  • Humans
  • Male
  • Polymerase Chain Reaction
  • Polymorphism, Single Nucleotide*
  • Wet Macular Degeneration / ethnology
  • Wet Macular Degeneration / genetics*

Substances

  • High-Temperature Requirement A Serine Peptidase 1
  • HTRA1 protein, human