Error-Prone Splicing Controlled by the Ubiquitin Relative Hub1

Mol Cell. 2017 Aug 3;67(3):423-432.e4. doi: 10.1016/j.molcel.2017.06.021. Epub 2017 Jul 14.

Abstract

Accurate pre-mRNA splicing is needed for correct gene expression and relies on faithful splice site recognition. Here, we show that the ubiquitin-like protein Hub1 binds to the DEAD-box helicase Prp5, a key regulator of early spliceosome assembly, and stimulates its ATPase activity thereby enhancing splicing and relaxing fidelity. High Hub1 levels enhance splicing efficiency but also cause missplicing by tolerating suboptimal splice sites and branchpoint sequences. Notably, Prp5 itself is regulated by a Hub1-dependent negative feedback loop. Since Hub1-mediated splicing activation induces cryptic splicing of Prp5, it also represses Prp5 protein levels and thus curbs excessive missplicing. Our findings indicate that Hub1 mediates enhanced, but error-prone splicing, a mechanism that is tightly controlled by a feedback loop of PRP5 cryptic splicing activation.

Keywords: DEAD-box helicase; Hub1; Prp5; UBL5; pre-mRNA splicing; spliceosome assembly; splicing fidelity; ubiquitin-related protein.

MeSH terms

  • Adenosine Triphosphate / metabolism
  • Binding Sites
  • DEAD-box RNA Helicases / genetics
  • DEAD-box RNA Helicases / metabolism
  • Feedback, Physiological
  • Gene Expression Regulation, Fungal
  • Hydrolysis
  • Ligases / chemistry
  • Ligases / genetics
  • Ligases / metabolism*
  • Models, Molecular
  • Mutation
  • Protein Binding
  • Protein Conformation
  • RNA Precursors / genetics
  • RNA Precursors / metabolism*
  • RNA Splice Sites*
  • RNA Splicing*
  • RNA, Fungal / genetics
  • RNA, Fungal / metabolism*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism*
  • Saccharomyces cerevisiae / enzymology*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae Proteins / chemistry
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Spliceosomes / genetics
  • Spliceosomes / metabolism*
  • Structure-Activity Relationship
  • Time Factors

Substances

  • RNA Precursors
  • RNA Splice Sites
  • RNA, Fungal
  • RNA, Messenger
  • Saccharomyces cerevisiae Proteins
  • Adenosine Triphosphate
  • PRP5 protein, S cerevisiae
  • DEAD-box RNA Helicases
  • Ligases
  • HUB1 protein, S cerevisiae