Complete Genome Sequence of Dolosigranulum pigrum from a Patient with Interstitial Lung Disease Using Single-Molecule Real-Time Sequencing Technology

Rituparna Mukhopadhyay; Joselita Joaquin; Robin Hogue; Susan Fitzgerald; Guillaume Jospin; Kristin Mars; Jonathan A Eisen; Vishnu Chaturvedi

doi:10.1128/genomeA.00317-17

Complete Genome Sequence of Dolosigranulum pigrum from a Patient with Interstitial Lung Disease Using Single-Molecule Real-Time Sequencing Technology

Genome Announc. 2017 May 4;5(18):e00317-17. doi: 10.1128/genomeA.00317-17.

Authors

Rituparna Mukhopadhyay¹, Joselita Joaquin¹, Robin Hogue¹, Susan Fitzgerald², Guillaume Jospin³, Kristin Mars⁴, Jonathan A Eisen³, Vishnu Chaturvedi⁵

Affiliations

¹ Microbial Diseases Laboratory, California Department of Public Health, Richmond, California, USA.
² Kaiser Permanente, Santa Rosa Medical Center, Santa Rosa, California, USA.
³ University of California Davis Genome Center, Davis, California, USA.
⁴ Pacific Biosciences, Menlo Park, California, USA.
⁵ Microbial Diseases Laboratory, California Department of Public Health, Richmond, California, USA vishnu.Chaturvedi@cdph.ca.gov.

Abstract

The whole genome sequence of Dolosigranulum pigrum isolated from the blood of a patient with interstitial lung disease was sequenced with the Pacific Biosciences RS II platform. The genome size is 2.1 Mb with 2,127 annotated coding sequences; it contained two clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated proteins (Cas) systems.

Grants and funding

U50 CK000410/CK/NCEZID CDC HHS/United States