Extracellular microRNA signature in chronic kidney disease

Am J Physiol Renal Physiol. 2017 Jun 1;312(6):F982-F991. doi: 10.1152/ajprenal.00569.2016. Epub 2017 Jan 11.

Abstract

MicroRNAs (miRNAs) are noncoding RNAs that regulate posttranscriptional gene expression. In this study we characterized the circulating and urinary miRNA pattern associated with reduced glomerular filtration rate, using Affymetrix GeneChip miR 4.0 in 28 patients with chronic kidney disease (CKD). Top miRNA discoveries from the human studies were validated in an Alb/TGFβ mouse model of CKD, and in rat renal proximal tubular cells (NRK52E) exposed to TGFβ1. Plasma and urinary levels of procollagen III N-terminal propeptide and collagen IV were elevated in patients with decreased estimated glomerular filtration rate (eGFR). Expression of 384 urinary and 266 circulatory miRNAs were significantly different between CKD patients with eGFR ≥30 vs. <30 ml·min-1·1.73 m-2 Pathway analysis mapped multiple miRNAs to TGFβ signaling-related mRNA targets. Specifically, Let-7a was significantly downregulated, and miR-130a was significantly upregulated, in urine of patients with eGFR <30; miR-1825 and miR-1281 were upregulated in both urine and plasma of patients with decreased eGFR; and miR-423 was significantly downregulated in plasma of patients with decreased eGFR. miRNA expression in urine and plasma of Alb/TGFβ mice generally resembled and confirmed most, although not all, of the observations from the human studies. In response to TGFβ1 exposure, rat renal proximal tubular cells overexpressed miR-1825 and downregulated miR-423. Thus, miRNA are associated with kidney fibrosis, and specific urinary and plasma miRNA profile may have diagnostic and prognostic utility in CKD.

Keywords: TGFβ; chronic kidney disease; fibrosis.

Publication types

  • Research Support, N.I.H., Intramural
  • Research Support, N.I.H., Extramural

MeSH terms

  • Adult
  • Aged
  • Albumins / genetics
  • Animals
  • Cell Line
  • Disease Models, Animal
  • Female
  • Fibrosis
  • Gene Expression Profiling / methods
  • Gene Regulatory Networks
  • Genetic Markers
  • Genetic Predisposition to Disease
  • Glomerular Filtration Rate
  • Humans
  • Kidney / drug effects
  • Kidney / metabolism*
  • Kidney / pathology
  • Kidney / physiopathology
  • Male
  • Mice, Inbred C57BL
  • Mice, Inbred CBA
  • Mice, Transgenic
  • MicroRNAs / blood
  • MicroRNAs / genetics*
  • MicroRNAs / urine
  • Middle Aged
  • Oligonucleotide Array Sequence Analysis
  • Phenotype
  • Rats
  • Renal Insufficiency, Chronic / blood
  • Renal Insufficiency, Chronic / genetics*
  • Renal Insufficiency, Chronic / physiopathology
  • Renal Insufficiency, Chronic / urine
  • Transcriptome*
  • Transforming Growth Factor beta / genetics
  • Transforming Growth Factor beta1 / pharmacology

Substances

  • Albumins
  • Genetic Markers
  • MicroRNAs
  • Transforming Growth Factor beta
  • Transforming Growth Factor beta1