Nucleotide sequence and genetic organization of Hungarian grapevine chrome mosaic nepovirus RNA2

Nucleic Acids Res. 1989 Oct 11;17(19):7809-19. doi: 10.1093/nar/17.19.7809.

Abstract

The complete nucleotide sequence of hungarian grapevine chrome mosaic nepovirus (GCMV) RNA2 has been determined. The RNA sequence is 4441 nucleotides in length, excluding the poly(A) tail. A polyprotein of 1324 amino acids with a calculated molecular weight of 146 kDa is encoded in a single long open reading frame extending from nucleotides 218 to 4190. This polyprotein is homologous with the protein encoded by the S strain of tomato black ring virus (TBRV) RNA2, the only other nepovirus sequenced so far. Direct sequencing of the viral coat protein and in vitro translation of transcripts derived from cDNA sequences demonstrate that, as for comoviruses, the coat protein is located at the carboxy terminus of the polyprotein. A model for the expression of GCMV RNA2 is presented.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Cloning, Molecular / methods
  • Genes, Viral*
  • Molecular Sequence Data
  • Mosaic Viruses / genetics*
  • Plasmids
  • RNA, Viral / genetics*
  • Sequence Homology, Nucleic Acid

Substances

  • RNA, Viral

Associated data

  • GENBANK/X15163