"Head-to-head" double-hamburger-like structure of di-ruthenated d(GpG) adducts of mono-functional Ru-arene anticancer complexes

Dalton Trans. 2016 Nov 22;45(46):18676-18688. doi: 10.1039/c6dt03356c.

Abstract

Guanine bases in DNA are targets for some Ru-arene anticancer complexes. We have investigated the structure of the novel di-ruthenated d(GpG) adduct Ru2-GpG (where Ru = {(η6-biphenyl)-Ru(en)}2+ (1')) in aqueous solution. 2D NMR results indicate that there are two conformers, supported by modeling studies. The major conformer I is a novel double-hamburger-like structure with a "head-to-head" (HH) base arrangement involving hydrophobic interactions between neighboring arene rings, the first example of a HH d(GpG) adduct constructed by weak interactions. Hence there are significant differences compared to Pt-d(GpG) adducts formed by cisplatin. There is no obviously rigid bending for the major conformer I. The minor conformer II of Ru2-GpG has a back-to-back structure, with two ruthenated guanine bases flipped away from each other. 19-23 base-pair oligodeoxyribonucleotides containing central TGGT sequences di-ruthenated by 1 show no directional bending, only slightly distorted di-ruthenated duplexes, consistent with the NMR data for conformer I. The structural differences and similarities of d(GpG) residues which are di-ruthenated or cross-linked by platination are discussed in the context of the biological activity of these metal complexes.

MeSH terms

  • Antineoplastic Agents / chemistry*
  • Biphenyl Compounds / chemistry*
  • Coordination Complexes / chemistry*
  • DNA / chemistry
  • DNA Adducts / chemistry
  • Dinucleoside Phosphates / chemistry*
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Molecular Conformation
  • Ruthenium / chemistry*

Substances

  • Antineoplastic Agents
  • Biphenyl Compounds
  • Coordination Complexes
  • DNA Adducts
  • Dinucleoside Phosphates
  • diphenyl
  • guanylyl-(3'-5')-guanosine
  • Ruthenium
  • DNA