Genome-Wide Analysis of the bZIP Gene Family Identifies Two ABI5-Like bZIP Transcription Factors, BrABI5a and BrABI5b, as Positive Modulators of ABA Signalling in Chinese Cabbage

PLoS One. 2016 Jul 14;11(7):e0158966. doi: 10.1371/journal.pone.0158966. eCollection 2016.

Abstract

bZIP (basic leucine zipper) transcription factors coordinate plant growth and development and control responses to environmental stimuli. The genome of Chinese cabbage (Brassica rapa) encodes 136 putative bZIP transcription factors. The bZIP transcription factors in Brassica rapa (BrbZIP) are classified into 10 subfamilies. Phylogenetic relationship analysis reveals that subfamily A consists of 23 BrbZIPs. Two BrbZIPs within subfamily A, Bra005287 and Bra017251, display high similarity to ABI5 (ABA Insensitive 5). Expression of subfamily A BrbZIPs, like BrABI5a (Bra005287/BrbZIP14) and BrABI5b (Bra017251/BrbZIP13), are significantly induced by the plant hormone ABA. Subcellular localization assay reveal that both BrABI5a and BrABI5b have a nuclear localization. BrABI5a and BrABI5b could directly stimulate ABA Responsive Element-driven HIS (a HIS3 reporter gene, which confers His prototrophy) or LUC (LUCIFERASE) expression in yeast and Arabidopsis protoplast. Deletion of the bZIP motif abolished BrABI5a and BrABI5b transcriptional activity. The ABA insensitive phenotype of Arabidopsis abi5-1 is completely suppressed in transgenic lines expressing BrABI5a or BrABI5b. Overall, these results suggest that ABI5 orthologs, BrABI5a and BrABI5b, have key roles in ABA signalling in Chinese cabbage.

MeSH terms

  • Abscisic Acid / metabolism*
  • Basic-Leucine Zipper Transcription Factors / genetics*
  • Brassica rapa / genetics*
  • Brassica rapa / metabolism
  • Chromosome Mapping
  • Exons / genetics
  • Gene Expression Regulation, Plant / genetics
  • Genome-Wide Association Study
  • Germination / physiology
  • Introns / genetics
  • Phylogeny
  • Plant Growth Regulators / metabolism*
  • Plants, Genetically Modified
  • Real-Time Polymerase Chain Reaction
  • Signal Transduction*
  • Two-Hybrid System Techniques

Substances

  • Basic-Leucine Zipper Transcription Factors
  • Plant Growth Regulators
  • Abscisic Acid

Grants and funding

This work was supported by grants from National Natural Science Foundation of China to Zhou Xiaona (31201630), grants from the State Scholarship Fund to Dr. Xie Chang Gen by China Scholarship Council (201506305025), and grants from the Young Faculty Study Abroad Program and the Fundamental Research Funds for Science and Technology Innovation Program of the Central Universities (2452015216) to Dr. Xie Chang Gen by Northwest A&F University.