Epigenetic regulation of cyclooxygenase-2 by methylation of c8orf4 in pulmonary fibrosis

Clin Sci (Lond). 2016 Apr;130(8):575-86. doi: 10.1042/CS20150697. Epub 2016 Jan 7.

Abstract

Fibroblasts derived from the lungs of patients with idiopathic pulmonary fibrosis (IPF) and systemic sclerosis (SSc) produce low levels of prostaglandin (PG) E2, due to a limited capacity to up-regulate cyclooxygenase-2 (COX-2). This deficiency contributes functionally to the fibroproliferative state, however the mechanisms responsible are incompletely understood. In the present study, we examined whether the reduced level of COX-2 mRNA expression observed in fibrotic lung fibroblasts is regulated epigenetically. The DNA methylation inhibitor, 5-aza-2'-deoxycytidine (5AZA) restored COX-2 mRNA expression by fibrotic lung fibroblasts dose dependently. Functionally, this resulted in normalization of fibroblast phenotype in terms of PGE2 production, collagen mRNA expression and sensitivity to apoptosis. COX-2 methylation assessed by bisulfite sequencing and methylation microarrays was not different in fibrotic fibroblasts compared with controls. However, further analysis of the methylation array data identified a transcriptional regulator, chromosome 8 open reading frame 4 (thyroid cancer protein 1, TC-1) (c8orf4), which is hypermethylated and down-regulated in fibrotic fibroblasts compared with controls. siRNA knockdown of c8orf4 in control fibroblasts down-regulated COX-2 and PGE2 production generating a phenotype similar to that observed in fibrotic lung fibroblasts. Chromatin immunoprecipitation demonstrated that c8orf4 regulates COX-2 expression in lung fibroblasts through binding of the proximal promoter. We conclude that the decreased capacity of fibrotic lung fibroblasts to up-regulate COX-2 expression and COX-2-derived PGE2 synthesis is due to an indirect epigenetic mechanism involving hypermethylation of the transcriptional regulator, c8orf4.

Keywords: DNA methylation; cyclooxygenase-2; fibroblast; idiopathic pulmonary fibrosis; prostaglandin E2; systemic sclerosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Binding Sites
  • Case-Control Studies
  • Cell Proliferation
  • Cells, Cultured
  • Cyclooxygenase 2 / genetics*
  • Cyclooxygenase 2 / metabolism
  • DNA Methylation* / drug effects
  • DNA Modification Methylases / antagonists & inhibitors
  • DNA Modification Methylases / metabolism
  • Dinoprostone / metabolism
  • Dose-Response Relationship, Drug
  • Down-Regulation
  • Enzyme Inhibitors / pharmacology
  • Epigenesis, Genetic* / drug effects
  • Female
  • Fibroblasts / drug effects
  • Fibroblasts / enzymology*
  • Fibroblasts / pathology
  • Gene Expression Regulation, Neoplastic
  • Genotype
  • Humans
  • Lung / drug effects
  • Lung / enzymology*
  • Lung / pathology
  • Male
  • Middle Aged
  • Neoplasm Proteins / genetics*
  • Neoplasm Proteins / metabolism
  • Phenotype
  • Promoter Regions, Genetic
  • Pulmonary Fibrosis / enzymology
  • Pulmonary Fibrosis / genetics*
  • Pulmonary Fibrosis / pathology
  • RNA Interference
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Scleroderma, Systemic / enzymology
  • Scleroderma, Systemic / genetics*
  • Scleroderma, Systemic / pathology
  • Transcription, Genetic
  • Transfection

Substances

  • Enzyme Inhibitors
  • Neoplasm Proteins
  • RNA, Messenger
  • TCIM protein, human
  • Cyclooxygenase 2
  • PTGS2 protein, human
  • DNA Modification Methylases
  • Dinoprostone