High Resolution Consensus Mapping of Quantitative Trait Loci for Fiber Strength, Length and Micronaire on Chromosome 25 of the Upland Cotton (Gossypium hirsutum L.)

PLoS One. 2015 Aug 11;10(8):e0135430. doi: 10.1371/journal.pone.0135430. eCollection 2015.

Abstract

Cotton (Gossypium hirsutum L.) is an important agricultural crop that provides renewable natural fiber resources for the global textile industry. Technological developments in the textile industry and improvements in human living standards have increased the requirement for supplies and better quality cotton. Upland cotton 0-153 is an elite cultivar harboring strong fiber strength genes. To conduct quantitative trait locus (QTL) mapping for fiber quality in 0-153, we developed a population of 196 recombinant inbred lines (RILs) from a cross between 0-153 and sGK9708. The fiber quality traits in 11 environments were measured and a genetic linkage map of chromosome 25 comprising 210 loci was constructed using this RIL population, mainly using simple sequence repeat markers and single nucleotide polymorphism markers. QTLs were identified across diverse environments using the composite interval mapping method. A total of 37 QTLs for fiber quality traits were identified on chromosome 25, of which 17 were stably expressed in at least in two environments. A stable fiber strength QTL, qFS-chr25-4, which was detected in seven environments and was located in the marker interval between CRI-SNP120491 and BNL2572, could explain 6.53%-11.83% of the observed phenotypic variations. Meta-analysis also confirmed the above QTLs with previous reports. Application of these QTLs could contribute to improving fiber quality and provide information for marker-assisted selection.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromosome Mapping*
  • Chromosomes, Plant*
  • Cotton Fiber*
  • Crosses, Genetic
  • Gene Expression
  • Genetic Linkage
  • Genetic Markers
  • Gossypium / genetics*
  • Microsatellite Repeats
  • Phenotype*
  • Polymorphism, Single Nucleotide
  • Quantitative Trait Loci*
  • Quantitative Trait, Heritable

Substances

  • Genetic Markers

Grants and funding

This work was funded by the National Natural Science Foundation of China (31371668, 31471538), the National High Technology Research and Development Program of China (2012AA101108), the National Agricultural Science and technology innovation project for CAAS and the Henan province foundation with cutting-edge technology research projects (142300413202). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.