Binding of the 3' terminus of tRNA to 23S rRNA in the ribosomal exit site actively promotes translocation

EMBO J. 1989 Dec 1;8(12):3933-8. doi: 10.1002/j.1460-2075.1989.tb08574.x.

Abstract

A key event in ribosomal protein synthesis is the translocation of deacylated tRNA, peptidyl tRNA and mRNA, which is catalyzed by elongation factor G (EF-G) and requires GTP. To address the molecular mechanism of the reaction we have studied the functional role of a tRNA exit site (E site) for tRNA release during translocation. We show that modifications of the 3' end of tRNAPhe, which considerably decrease the affinity of E-site binding, lower the translocation rate up to 40-fold. Furthermore, 3'-end modifications lower or abolish the stimulation by P site-bound tRNA of the GTPase activity of EF-G on the ribosome. The results suggest that a hydrogen-bonding interaction of the 3'-terminal adenine of the leaving tRNA in the E site, most likely base-pairing with 23S rRNA, is essential for the translocation reaction. Furthermore, this interaction stimulates the GTP hydrolyzing activity of EF-G on the ribosome. We propose the following molecular model of translocation: after the binding of EF-G.GTP, the P site-bound tRNA, by a movement of the 3'-terminal single-stranded ACCA tail, establishes an interaction with 23S rRNA in the adjacent E site, thereby initiating the tRNA transfer from the P site to the E site and promoting GTP hydrolysis. The co-operative interaction between the E site and the EF-G binding site, which are distantly located on the 50S ribosomal subunit, is probably mediated by a conformational change of 23S rRNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Binding Sites
  • GTP Phosphohydrolase-Linked Elongation Factors / metabolism
  • Kinetics
  • Peptide Elongation Factors / metabolism
  • Protein Biosynthesis*
  • RNA, Ribosomal / metabolism*
  • RNA, Ribosomal, 23S / metabolism*
  • RNA, Transfer, Amino Acid-Specific / metabolism*
  • RNA, Transfer, Phe / metabolism*
  • Ribosomes / metabolism*

Substances

  • Peptide Elongation Factors
  • RNA, Ribosomal
  • RNA, Ribosomal, 23S
  • RNA, Transfer, Amino Acid-Specific
  • RNA, Transfer, Phe
  • GTP Phosphohydrolase-Linked Elongation Factors