Modification of the wobble uridine in bacterial and mitochondrial tRNAs reading NNA/NNG triplets of 2-codon boxes

RNA Biol. 2014;11(12):1495-507. doi: 10.4161/15476286.2014.992269.

Abstract

Posttranscriptional modification of the uridine located at the wobble position (U34) of tRNAs is crucial for optimization of translation. Defects in the U34 modification of mitochondrial-tRNAs are associated with a group of rare diseases collectively characterized by the impairment of the oxidative phosphorylation system. Retrograde signaling pathways from mitochondria to nucleus are involved in the pathophysiology of these diseases. These pathways may be triggered by not only the disturbance of the mitochondrial (mt) translation caused by hypomodification of tRNAs, but also as a result of nonconventional roles of mt-tRNAs and mt-tRNA-modifying enzymes. The evolutionary conservation of these enzymes supports their importance for cell and organismal functions. Interestingly, bacterial and eukaryotic cells respond to stress by altering the expression or activity of these tRNA-modifying enzymes, which leads to changes in the modification status of tRNAs. This review summarizes recent findings about these enzymes and sets them within the previous data context.

Keywords: GTPBP3; MELAS; MTO1; MnmA; MnmC; MnmE; MnmG; TRMU/MTU1; TrmL; mitochondrial diseases; tRNA modification.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Anticodon / metabolism
  • Cell Nucleus / genetics
  • Cell Nucleus / metabolism
  • Codon / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • GTP Phosphohydrolases / genetics
  • GTP Phosphohydrolases / metabolism
  • Mitochondria / genetics
  • Mitochondria / metabolism
  • Multienzyme Complexes / genetics
  • Multienzyme Complexes / metabolism
  • One-Carbon Group Transferases / genetics
  • One-Carbon Group Transferases / metabolism
  • Oxidative Phosphorylation
  • RNA / genetics
  • RNA / metabolism*
  • RNA Processing, Post-Transcriptional*
  • RNA, Mitochondrial
  • RNA, Transfer, Amino Acid-Specific / genetics
  • RNA, Transfer, Amino Acid-Specific / metabolism
  • Signal Transduction
  • Uridine / analogs & derivatives*
  • Uridine / metabolism*

Substances

  • 5-carboxy-methylaminomethyl-2'-O-methyluridine
  • Anticodon
  • Codon
  • Escherichia coli Proteins
  • MnmC protein, E coli
  • Multienzyme Complexes
  • RNA, Mitochondrial
  • RNA, Transfer, Amino Acid-Specific
  • RNA
  • MnmG protein, E coli
  • One-Carbon Group Transferases
  • GTP Phosphohydrolases
  • MnmE protein, E coli
  • Uridine