Quantitative detection of residual porcine host cell DNA by real-time PCR

Biologicals. 2014 Mar;42(2):74-8. doi: 10.1016/j.biologicals.2013.10.005. Epub 2014 Jan 3.

Abstract

All biological products are derived from complex living systems and are often mixed with large numbers of impurities. For reasons of safety, residual host-cell DNA must be eliminated during processing. To assay host-cell DNA content in biopharmaceutical products derived from porcine sources, this study applies the quantitative real-time polymerase chain reaction (Q-PCR) method. The optimized assay in this study is based on the pol region of the porcine endogenous retrovirus (PERV). Assay validation results demonstrate that the proposed assay has appropriate accuracy, preciseness, reproducibility, and sensitivity. Primer and probe specificity are evaluated in real-time Q-PCR reactions using genomic DNA from rabbit, mouse, cat, hamster, monkey, human cell, yeast, and Escherichia coli as templates. The sensitivity of real-time Q-PCR is determined using genomic DNA from the porcine kidney cell line. The reliable detection range is within 0.5-10(5) pg/reaction. The limit of quantitation is 500 fg. The sensitivity of the assay meets the authority criterion. Moreover, the assay is applied to determine the level of host-cell DNA in recombinant human coagulation factor IX (rhFIX) from transgenic pigs. The real-time Q-PCR assay is thus a promising new tool for quantitative detection and clearance validation of residual porcine DNA when manufacturing recombinant therapeutics.

Keywords: PERV; Q-PCR; Residual DNA; transgenic pig.

Publication types

  • Research Support, Non-U.S. Gov't
  • Validation Study

MeSH terms

  • Animals
  • Animals, Genetically Modified
  • Base Sequence
  • DNA / analysis*
  • DNA Primers
  • Endogenous Retroviruses / genetics
  • Factor IX / chemistry
  • Factor IX / genetics
  • Humans
  • Limit of Detection
  • Real-Time Polymerase Chain Reaction / methods*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Species Specificity
  • Swine

Substances

  • DNA Primers
  • Recombinant Proteins
  • Factor IX
  • DNA