Permanent draft genomes of the two Rhodopirellula europaea strains 6C and SH398

Tim Richter-Heitmann; Michael Richter; Anna Klindworth; Carl-Eric Wegner; Carsten S Frank; Frank Oliver Glöckner; Jens Harder

doi:10.1016/j.margen.2013.11.003

Permanent draft genomes of the two Rhodopirellula europaea strains 6C and SH398

Mar Genomics. 2014 Feb:13:15-6. doi: 10.1016/j.margen.2013.11.003. Epub 2013 Nov 25.

Authors

Tim Richter-Heitmann¹, Michael Richter², Anna Klindworth³, Carl-Eric Wegner⁴, Carsten S Frank⁵, Frank Oliver Glöckner², Jens Harder⁶

Affiliations

¹ Max Planck Institute for Marine Microbiology, Microbial Genomics and Bioinformatics Research Group, Bremen, Germany; Max Planck Institute for Marine Microbiology, Department of Microbiology, Bremen, Germany.
² Max Planck Institute for Marine Microbiology, Microbial Genomics and Bioinformatics Research Group, Bremen, Germany.
³ Max Planck Institute for Marine Microbiology, Microbial Genomics and Bioinformatics Research Group, Bremen, Germany; Jacobs University Bremen, School of Engineering and Science, Bremen, Germany.
⁴ Max Planck Institute for Marine Microbiology, Microbial Genomics and Bioinformatics Research Group, Bremen, Germany; Max Planck Institute for Terrestrial Microbiology, Department of Biogeochemistry, Marburg, Germany.
⁵ Max Planck Institute for Marine Microbiology, Department of Microbiology, Bremen, Germany.
⁶ Max Planck Institute for Marine Microbiology, Department of Microbiology, Bremen, Germany. Electronic address: jharder@mpi-bremen.de.

PMID: 24286834
DOI: 10.1016/j.margen.2013.11.003

Abstract

The genomes of two Rhodopirellula europaea strains were sequenced as permanent drafts to study the genomic diversity within this genus, especially in comparison with the closed genome of the type strain Rhodopirellula baltica SH1(T). The isolates are part of a larger study to infer the biogeography of Rhodopirellula species in European marine waters, as well as to amend the genus description of R. baltica. This genomics resource article is the second of a series of five publications describing a total of eight new permanent daft genomes of Rhodopirellula species.

Keywords: Biogeography; Diversity; Planctomycetes; Rhodopirellula europaea.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Base Sequence
Cluster Analysis
Computational Biology
Data Mining
Genome, Bacterial / genetics*
Genomics
Geologic Sediments / microbiology*
Germany
Italy
Molecular Sequence Annotation
Molecular Sequence Data
Oceans and Seas
Phylogeography
Planctomycetales / classification*
Planctomycetales / genetics*
Sequence Analysis, DNA
Species Specificity

Associated data

GENBANK/ANMO00000000
GENBANK/ANOF00000000