Site-directed mutational analysis of a U4 small nuclear RNA gene proximal sequence element. Localization and identification of functional nucleotides

J Biol Chem. 1990 Jun 15;265(17):9728-31.

Abstract

The genes that encode the small nuclear RNAs (snRNAs) are unusual RNA polymerase II transcription units in that 5'-flanking DNA sequences more than 50 base pairs upstream of snRNA genes are essential for specifying the transcription initiation site. The relevant cis-acting DNA sequence, termed the proximal sequence element (PSE), is required for both transcription initiation and 3'-end formation of snRNAs. We have used site-directed mutagenesis and expression in Xenopus oocytes to map nucleotides important for the function of the chicken U4B snRNA gene PSE. The results indicate that nucleotide sequences upstream of position -65 are not required for U4B PSE activity. However, nucleotides lying within a region 53-65 base pairs upstream of the U4B gene are essential for obtaining a detectable level of U4B gene expression. Six nucleotides between positions -53 and -59 were identified at which base substitutions reduced the transcriptional activity of the U4B gene.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Cell Nucleus / metabolism
  • Chickens
  • Cloning, Molecular
  • Female
  • Genes*
  • Molecular Sequence Data
  • Mutation*
  • Oocytes / metabolism
  • RNA Polymerase II / metabolism
  • RNA, Small Nuclear / genetics*
  • Restriction Mapping
  • Templates, Genetic
  • Transcription, Genetic
  • Xenopus laevis

Substances

  • RNA, Small Nuclear
  • RNA Polymerase II