The role of heme binding by DNA-protective protein from starved cells (Dps) in the Tolerance of Porphyromonas gingivalis to heme toxicity

J Biol Chem. 2012 Dec 7;287(50):42243-58. doi: 10.1074/jbc.M112.392787. Epub 2012 Oct 18.

Abstract

The widely expressed DNA-protective protein from starved-cells (Dps) family proteins are considered major contributors to prokaryotic resistance to stress. We show here that Porphyromonas gingivalis Dps (PgDps), previously described as an iron-storage and DNA-binding protein, also mediates heme sequestration. We determined that heme binds strongly to PgDps with an apparent K(d) of 3.7 × 10(-8) m and is coordinated by a single surface-located cysteine at the fifth axial ligand position. Heme and iron sequestered in separate sites by PgDps provide protection of DNA from H(2)O(2)-mediated free radical damage and were found to be important for growth of P. gingivalis under excess heme as the only iron source. Conservation of the heme-coordinating cysteine among Dps isoforms from the Bacteroidales order suggests that this function may be a common feature within these anaerobic bacteria.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • DNA Damage / drug effects*
  • DNA Damage / genetics
  • DNA, Bacterial / genetics
  • DNA, Bacterial / metabolism*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Drug Resistance, Bacterial / drug effects
  • Drug Resistance, Bacterial / physiology
  • Heme / pharmacology*
  • Hydrogen Peroxide / pharmacology
  • Iron / metabolism*
  • Oxidants / pharmacology
  • Porphyromonas gingivalis / genetics
  • Porphyromonas gingivalis / metabolism*
  • Protein Binding / drug effects
  • Protein Binding / genetics
  • Protein Isoforms / genetics
  • Protein Isoforms / metabolism

Substances

  • Bacterial Proteins
  • DNA, Bacterial
  • DNA-Binding Proteins
  • DPS protein, Bacteria
  • Oxidants
  • Protein Isoforms
  • Heme
  • Hydrogen Peroxide
  • Iron