A library of 3342 useful nonamer primers for genome sequencing

Gene. 1990 Nov 30;96(1):121-4. doi: 10.1016/0378-1119(90)90350-z.

Abstract

Primer-directed sequencing, of double-stranded large recombinant DNA molecules, has not been accepted because of the delay and expenses involved in the synthesis of oligodeoxyribonucleotide primers. A potential solution to this problem was proposed by Studier [Proc. Natl. Acad. Sci. USA 86 (1989) 6917-6921] for using a library of short oligomer primers. Szybalski [Gene 90 (1990) 177-178] has made a complementary proposal using ligated hexamers to reduce the number of oligomers needed. We have used a set of rules for a computer-aided selection of a library consisting of 3342 specific nonamers. The effectiveness of this library of nonamers to sequence specific genes was studied using human sequences available in GenBank.

MeSH terms

  • Base Sequence*
  • Computer Simulation
  • DNA, Recombinant / genetics*
  • Genomic Library*
  • Globins / genetics
  • Growth Hormone / genetics
  • Humans

Substances

  • DNA, Recombinant
  • Growth Hormone
  • Globins