miRSeqNovel: an R based workflow for analyzing miRNA sequencing data

Mol Cell Probes. 2012 Oct;26(5):208-11. doi: 10.1016/j.mcp.2012.05.002. Epub 2012 May 17.

Abstract

We present miRSeqNovel, an R based workflow for miRNA sequencing data analysis. miRSeqNovel can process both colorspace (SOLiD) and basespace (Illumina/Solexa) data by different mapping algorithms. It finds differentially expressed miRNAs and gives conservative prediction of novel miRNA candidates with customized parameters. miRSeqNovel is freely available at http://sourceforge.net/projects/mirseq/files.

MeSH terms

  • Algorithms
  • Arabidopsis / genetics
  • Humans
  • MicroRNAs / genetics*
  • Sequence Analysis, RNA*
  • Software*

Substances

  • MicroRNAs