Analysis of YM-216391 biosynthetic gene cluster and improvement of the cyclopeptide production in a heterologous host

ACS Chem Biol. 2012 Apr 20;7(4):646-51. doi: 10.1021/cb200479f. Epub 2012 Jan 31.

Abstract

YM-216391, an antitumor natural product, represents a new class of cyclic peptides containing a polyoxazole-thiazole moiety. Herein we describe its gene cluster encoding the biosynthetic paradigm featuring a ribosomally synthesizing precursor peptide followed by a series of novel posttranslational modifications, which include (i) cleavage of both N-terminal leader peptide and C-terminal extension peptide and cyclization in a head-to-tail fashion, (ii) conversion of an L-Ile to D-allo-Ile, and (iii) β-hydroxylation of Phe by a P450 monooxygenase followed by further heterocyclization and oxidation to form a phenyloxazole moiety. The cluster was heterologously expressed in Streptomyces lividans to bypass difficult genetic manipulation. Deletion of the ymR3 gene, encoding a putative transcriptional regulator, increased the YM-216391 yield about 20-fold higher than the original yields for the heterologous expression of wild-type cluster, which set the stage for further combinatorial biosynthesis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antineoplastic Agents
  • Biological Products
  • Cloning, Molecular / methods*
  • Genes, Bacterial
  • Multigene Family*
  • Oxazoles
  • Peptides, Cyclic / biosynthesis*
  • Peptides, Cyclic / genetics
  • Protein Engineering / methods*
  • Streptomyces / genetics

Substances

  • Antineoplastic Agents
  • Biological Products
  • Oxazoles
  • Peptides, Cyclic
  • YM 216391