"SNP Snappy": a strategy for fast genome-wide association studies fitting a full mixed model

Genetics. 2012 Jan;190(1):275-7. doi: 10.1534/genetics.111.134841. Epub 2011 Oct 20.

Abstract

A strategy to reduce computational demands of genome-wide association studies fitting a mixed model is presented. Improvements are achieved by utilizing a large proportion of calculations that remain constant across the multiple analyses for individual markers involved, with estimates obtained without inverting large matrices.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Animals
  • Computational Biology / methods
  • Computer Simulation
  • Genome-Wide Association Study*
  • Internet
  • Models, Genetic*
  • Polymorphism, Single Nucleotide*
  • Software*