Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals

Nature. 2011 Aug 10;476(7360):355-9. doi: 10.1038/nature10333.

Abstract

Advanced (long-chain) fuels and chemicals are generated from short-chain metabolic intermediates through pathways that require carbon-chain elongation. The condensation reactions mediating this carbon-carbon bond formation can be catalysed by enzymes from the thiolase superfamily, including β-ketoacyl-acyl-carrier protein (ACP) synthases, polyketide synthases, 3-hydroxy-3-methylglutaryl-CoA synthases, and biosynthetic thiolases. Pathways involving these enzymes have been exploited for fuel and chemical production, with fatty-acid biosynthesis (β-ketoacyl-ACP synthases) attracting the most attention in recent years. Degradative thiolases, which are part of the thiolase superfamily and naturally function in the β-oxidation of fatty acids, can also operate in the synthetic direction and thus enable carbon-chain elongation. Here we demonstrate that a functional reversal of the β-oxidation cycle can be used as a metabolic platform for the synthesis of alcohols and carboxylic acids with various chain lengths and functionalities. This pathway operates with coenzyme A (CoA) thioester intermediates and directly uses acetyl-CoA for acyl-chain elongation (rather than first requiring ATP-dependent activation to malonyl-CoA), characteristics that enable product synthesis at maximum carbon and energy efficiency. The reversal of the β-oxidation cycle was engineered in Escherichia coli and used in combination with endogenous dehydrogenases and thioesterases to synthesize n-alcohols, fatty acids and 3-hydroxy-, 3-keto- and trans-Δ(2)-carboxylic acids. The superior nature of the engineered pathway was demonstrated by producing higher-chain linear n-alcohols (C ≥ 4) and extracellular long-chain fatty acids (C > 10) at higher efficiency than previously reported. The ubiquitous nature of β-oxidation, aldehyde/alcohol dehydrogenase and thioesterase enzymes has the potential to enable the efficient synthesis of these products in other industrial organisms.

MeSH terms

  • Acetyl Coenzyme A / metabolism
  • Acyl Coenzyme A / metabolism
  • Alcohol Dehydrogenase / metabolism
  • Alcohols / chemistry
  • Alcohols / metabolism
  • Aldehyde Dehydrogenase / metabolism
  • Biofuels* / analysis
  • Biofuels* / supply & distribution
  • Butanols / metabolism
  • Carboxylic Acids / chemistry
  • Carboxylic Acids / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Fatty Acids / biosynthesis
  • Fatty Acids / chemistry
  • Fatty Acids / metabolism
  • Metabolic Networks and Pathways*
  • Oxidation-Reduction
  • Thiolester Hydrolases / metabolism

Substances

  • Acyl Coenzyme A
  • Alcohols
  • Biofuels
  • Butanols
  • Carboxylic Acids
  • Fatty Acids
  • acetoacetyl CoA
  • Acetyl Coenzyme A
  • Alcohol Dehydrogenase
  • Aldehyde Dehydrogenase
  • Thiolester Hydrolases