Sequence of the fusion protein gene of human parainfluenza type 2 virus and its 3' intergenic region: lack of small hydrophobic (SH) gene

Virology. 1990 Sep;178(1):289-92. doi: 10.1016/0042-6822(90)90406-h.

Abstract

cDNA clones representing the fusion (F) gene of human parainfluenza virus type 2 (PIV-2) were isolated from cDNA libraries constructed from virus-specific mRNA and genomic RNA, and the complete nucleotide sequence of the F gene was determined. The F gene is 1854 nucleotides long and encodes one long open reading frame of 551 amino acids. The cleavage site for activation of the precursor Fo protein is Thr-Arg-Gln-Lys-Arg. The F gene of PIV-2 is most closely related to those of simian virus 5 (SV5) and mumps virus (MuV). Interestingly, although the HN glycoprotein of PIV-2 shows no relatedness to the HA glycoprotein of measles virus (MV), a distinct homology is found in the F proteins of PIV-2 and MV. As concerns F proteins, paramyxoviruses can be divided into two subgroups; that is, PIV-2, SV5, and MuV belong to one group, and HPIV-1, SV, and PIV-3 belong to the other group. Newcastle disease virus (NDV) and MV are intermediate. Coding regions for small hydrophobic (SH) proteins have been found between the HN and F genes of SV5 and MuV, which are the viruses most closely related to PIV-2. However, such a gene could not be detected in two different strains of PIV-2.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • DNA, Viral / analysis
  • Genes, Viral*
  • Genomic Library
  • Humans
  • Introns
  • Molecular Sequence Data
  • Parainfluenza Virus 2, Human / genetics*
  • Respirovirus / genetics*
  • Retroviridae Proteins, Oncogenic / genetics*
  • Sequence Homology, Nucleic Acid
  • Solubility
  • Viral Fusion Proteins / genetics*

Substances

  • DNA, Viral
  • Retroviridae Proteins, Oncogenic
  • Viral Fusion Proteins
  • small hydrophobic protein, virus

Associated data

  • GENBANK/M55698